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CCDC28A coiled-coil domain containing 28A [ Sus scrofa (pig) ]

Gene ID: 100512200, updated on 8-Mar-2024

Summary

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Official Symbol
CCDC28Aprovided by VGNC
Official Full Name
coiled-coil domain containing 28Aprovided by VGNC
Primary source
VGNC:VGNC:86289
See related
Ensembl:ENSSSCG00000004148
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in kidney (RPKM 20.3), ovary (RPKM 15.8) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
6
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 1 NC_010443.5 (25646997..25663277, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 1 NC_010443.4 (28782282..28798563, complement)

Chromosome 1 - NC_010443.5Genomic Context describing neighboring genes Neighboring gene RALBP1 associated Eps domain containing 1 Neighboring gene epithelial cell transforming 2 like Neighboring gene NHS like 1 Neighboring gene heme binding protein 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
coiled-coil domain-containing protein 28A

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001244669.1 → NP_001231598.1  coiled-coil domain-containing protein 28A

    Status: VALIDATED

    Source sequence(s)
    AK231417
    UniProtKB/TrEMBL
    A0A4X1VL97, A0A8D0JQA1
    Related
    ENSSSCP00000069164.1, ENSSSCT00000087117.1
    Conserved Domains (1) summary
    pfam13270
    Location:83 → 167
    DUF4061; Domain of unknown function (DUF4061)

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010443.5 Reference Sscrofa11.1 Primary Assembly

    Range
    25646997..25663277 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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