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SRRM2 serine/arginine repetitive matrix 2 [ Sus scrofa (pig) ]

Gene ID: 100511011, updated on 8-Mar-2024

Summary

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Official Symbol
SRRM2provided by VGNC
Official Full Name
serine/arginine repetitive matrix 2provided by VGNC
Primary source
VGNC:VGNC:93468
See related
Ensembl:ENSSSCG00000023304
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in spleen (RPKM 54.6), ovary (RPKM 52.0) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 3
Exon count:
17
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 3 NC_010445.4 (39275274..39293741)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 3 NC_010445.3 (40613487..40631943)

Chromosome 3 - NC_010445.4Genomic Context describing neighboring genes Neighboring gene FLYWCH-type zinc finger 1 Neighboring gene FLYWCH family member 2 Neighboring gene elongin B Neighboring gene serine protease 33

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. Porcine gene discovery by normalized cDNA-library sequencing and EST cluster assembly. Fahrenkrug SC, et al. Mamm Genome, 2002 Aug. PMID 12226715
  2. Porcine transcriptome analysis based on 97 non-normalized cDNA libraries and assembly of 1,021,891 expressed sequence tags. Gorodkin J, et al. Genome Biol, 2007. PMID 17407547, Free PMC Article
  3. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  4. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
serine/arginine repetitive matrix protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001244545.1 → NP_001231474.1  serine/arginine repetitive matrix protein 2

    Status: PROVISIONAL

    Source sequence(s)
    AJ668421, AJ680217, AJ686242, AK231174, BE014995, CF179124, CK450990, CK467422, CN163036, CV864990, DN108535, DN121636, DN122209, DN125990, DY411946, DY416737, DY437818, EV888412, EW075271, EW103007, EW338291, FS662308
    UniProtKB/TrEMBL
    A0A480LWR6
    Related
    ENSSSCP00000055312.3, ENSSSCT00000055381.3
    Conserved Domains (1) summary
    pfam08312
    Location:59 → 101
    cwf21; cwf21 domain

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010445.4 Reference Sscrofa11.1 Primary Assembly

    Range
    39275274..39293741
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005662197.3 → XP_005662254.1  serine/arginine repetitive matrix protein 2 isoform X3

    UniProtKB/TrEMBL
    A0A8D1T9R4
    Conserved Domains (3) summary
    PHA03307
    Location:193 → 615
    PHA03307; transcriptional regulator ICP4; Provisional
    PRK07003
    Location:2082 → 2336
    PRK07003; DNA polymerase III subunits gamma and tau; Validated
    PRK07764
    Location:2203 → 2568
    PRK07764; DNA polymerase III subunits gamma and tau; Validated

  2. XM_005662196.3 → XP_005662253.1  serine/arginine repetitive matrix protein 2 isoform X2

    UniProtKB/TrEMBL
    A0A480LWR6
    Related
    ENSSSCP00000080047.1, ENSSSCT00000106283.1
    Conserved Domains (1) summary
    pfam08312
    Location:59 → 101
    cwf21; cwf21 domain

  3. XM_021085637.1 → XP_020941296.1  serine/arginine repetitive matrix protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A287BG41, A0A480LWR6, A0A480PS46, A0A4X1VTB4
    Conserved Domains (3) summary
    pfam08312
    Location:59 → 101
    cwf21; cwf21 domain
    cl26386
    Location:2178 → 2432
    DNA_pol3_gamma3; DNA polymerase III subunits gamma and tau domain III
    cl28033
    Location:289 → 711
    Herpes_ICP4_C; Herpesvirus ICP4-like protein C-terminal region

  4. XM_013995712.2 → XP_013851166.1  serine/arginine repetitive matrix protein 2 isoform X4

Nucleotide Protein Strain
Heading Accession and Version

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