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MATN4 matrilin 4 [ Sus scrofa (pig) ]

Gene ID: 100510939, updated on 8-Mar-2024

Summary

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Official Symbol
MATN4provided by VGNC
Official Full Name
matrilin 4provided by VGNC
Primary source
VGNC:VGNC:96412
See related
Ensembl:ENSSSCG00000007391
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Broad expression in lung (RPKM 10.6), subcutaneous adipose (RPKM 6.8) and 5 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 17
Exon count:
11
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 17 NC_010459.5 (47617559..47631195, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 17 NC_010459.4 (53222637..53233674, complement)

Chromosome 17 - NC_010459.5Genomic Context describing neighboring genes Neighboring gene antileukoproteinase Neighboring gene secretory leukocyte peptidase inhibitor Neighboring gene recombination signal binding protein for immunoglobulin kappa J region like Neighboring gene syndecan 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
matrilin-4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010459.5 Reference Sscrofa11.1 Primary Assembly

    Range
    47617559..47631195 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021077596.1 → XP_020933255.1  matrilin-4

    UniProtKB/TrEMBL
    A0A8D0IX40, A0A8D0XDU8, A0A8D1K4S6
    Related
    ENSSSCP00000007874.3, ENSSSCT00000008090.5
    Conserved Domains (3) summary
    cd01475
    Location:171 → 393
    vWA_Matrilin; VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. ...
    pfam14670
    Location:400 → 435
    FXa_inhibition; Coagulation Factor Xa inhibitory site
    cl00057
    Location:523 → 759
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
Nucleotide Protein
Heading Accession and Version

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