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ptchd4 patched domain containing 4 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100497488, updated on 8-Mar-2024

Summary

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Official Symbol
ptchd4provided by Xenbase
Official Full Name
patched domain containing 4provided by Xenbase
Primary source
Xenbase:XB-GENE-6044462
See related
Ensembl:ENSXETG00000011324
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Orthologs
human mouse all
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Genomic context

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See ptchd4 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
4
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 5 NC_030681.2 (146226544..146316354)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 5 NC_030681.1 (141986490..142026763)

Chromosome 5 - NC_030681.2Genomic Context describing neighboring genes Neighboring gene eva-1 homolog A Neighboring gene SH3 domain binding kinase 1 like Neighboring gene uncharacterized LOC116411091 Neighboring gene spermatogenesis associated, serine-rich 1 Neighboring gene opsin 5 Neighboring gene adhesion G protein-coupled receptor F4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
patched domain-containing protein 4
Names
patched domain-containing protein C6orf138 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030681.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    146226544..146316354
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031902998.1 → XP_031758858.1  patched domain-containing protein 4 isoform X1

    UniProtKB/TrEMBL
    A0A7D9NME5
    Related
    ENSXETP00000024731.4, ENSXETT00000024731.5
    Conserved Domains (1) summary
    cl25655
    Location:84 → 871
    Patched; Patched family

  2. XM_031902999.1 → XP_031758859.1  patched domain-containing protein 4 isoform X2

    UniProtKB/TrEMBL
    A0A8J1JLV4
    Conserved Domains (1) summary
    cl25655
    Location:24 → 697
    Patched; Patched family
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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