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LOC100496532 ficolin-1-B [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100496532, updated on 25-Jan-2024

Summary

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Official Symbol
LOC100496532provided by Xenbase
Official Full Name
ficolin-1-Bprovided by Xenbase
Primary source
Xenbase:XB-GENE-29083207
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
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Genomic context

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Location:
chromosome: 8
Exon count:
10
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 8 NC_030684.2 (3774308..3782962, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) Unplaced Scaffold NW_016683412.1 (213009..216484, complement)

Chromosome 8 - NC_030684.2Genomic Context describing neighboring genes Neighboring gene ficolin-1-B Neighboring gene uncharacterized LOC116406572 Neighboring gene ficolin-1-B-like Neighboring gene collagen type XI alpha 2 chain

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
ficolin-1-B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030684.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    3774308..3782962 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031890741.1 → XP_031746601.1  ficolin-1-B isoform X2

    UniProtKB/TrEMBL
    A0A1B8Y759, A0A8J1IQ22
    Conserved Domains (2) summary
    cd00087
    Location:101 → 314
    FReD; Fibrinogen-related domains (FReDs); C terminal globular domain of fibrinogen. Fibrinogen is involved in blood clotting, being activated by thrombin to assemble into fibrin clots. The N-termini of 2 times 3 chains come together to form a globular ...
    pfam01391
    Location:50 → 89
    Collagen; Collagen triple helix repeat (20 copies)

  2. XM_031890740.1 → XP_031746600.1  ficolin-1-B isoform X1

    UniProtKB/TrEMBL
    A0A1B8Y759, A0A8J1IPC9
    Conserved Domains (2) summary
    cd00087
    Location:134 → 347
    FReD; Fibrinogen-related domains (FReDs); C terminal globular domain of fibrinogen. Fibrinogen is involved in blood clotting, being activated by thrombin to assemble into fibrin clots. The N-termini of 2 times 3 chains come together to form a globular ...
    pfam01391
    Location:50 → 89
    Collagen; Collagen triple helix repeat (20 copies)
Nucleotide Protein Strain
Heading Accession and Version

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