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nr1i3 nuclear receptor subfamily 1 group I member 3 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100495136, updated on 8-Mar-2024

Summary

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Official Symbol
nr1i3provided by Xenbase
Official Full Name
nuclear receptor subfamily 1 group I member 3provided by Xenbase
Primary source
Xenbase:XB-GENE-479859
See related
Ensembl:ENSXETG00000031759
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
CAR; car1; mb67
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 8
Exon count:
11
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 8 NC_030684.2 (141422071..141454039)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) Unplaced Scaffold NW_016683437.1 (23708..30898, complement)

Chromosome 8 - NC_030684.2Genomic Context describing neighboring genes Neighboring gene myelin protein zero Neighboring gene Purkinje cell protein 4 like 1 Neighboring gene translocase of outer mitochondrial membrane 40 homolog-like Neighboring gene solute carrier family 25 member 44

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evolutionary history and functional characterization of the amphibian xenosensor CAR. Mathäs M, et al. Mol Endocrinol, 2012 Jan. PMID 22074953, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
nuclear receptor subfamily 1 group I member 3
Names
constitutive androstane receptor

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030684.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    141422071..141454039
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031891477.1 → XP_031747337.1  nuclear receptor subfamily 1 group I member 3 isoform X2

    UniProtKB/TrEMBL
    A0A6I8QWB3, A0A8J1IP21
    Related
    ENSXETP00000061422.3, ENSXETT00000060271.3
    Conserved Domains (2) summary
    cd07156
    Location:58 → 129
    NR_DBD_VDR_like; The DNA-binding domain of vitamin D receptors (VDR) like nuclear receptor family is composed of two C4-type zinc fingers
    cl11397
    Location:161 → 441
    NR_LBD; The ligand binding domain of nuclear receptors, a family of ligand-activated transcription regulators

  2. XM_031891476.1 → XP_031747336.1  nuclear receptor subfamily 1 group I member 3 isoform X1

    UniProtKB/TrEMBL
    A0A6I8QWB3, A0A6I8SU65
    Related
    ENSXETP00000101387.2, ENSXETT00000082458.2
    Conserved Domains (2) summary
    cd07156
    Location:63 → 134
    NR_DBD_VDR_like; The DNA-binding domain of vitamin D receptors (VDR) like nuclear receptor family is composed of two C4-type zinc fingers
    cl11397
    Location:166 → 446
    NR_LBD; The ligand binding domain of nuclear receptors, a family of ligand-activated transcription regulators
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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