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ptx3 pentraxin 3 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100494643, updated on 8-Mar-2024

Summary

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Official Symbol
ptx3provided by Xenbase
Official Full Name
pentraxin 3provided by Xenbase
Primary source
Xenbase:XB-GENE-5920007
See related
Ensembl:ENSXETG00000012244
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Orthologs
human mouse all
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Genomic context

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See ptx3 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
3
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 5 NC_030681.2 (115702849..115712001, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 5 NC_030681.1 (104269933..104279107, complement)

Chromosome 5 - NC_030681.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101734693 Neighboring gene solute carrier family 66 member 1 like Neighboring gene ventricular zone expressed PH domain containing 1 Neighboring gene palmitoyltransferase ZDHHC2 pseudogene Neighboring gene ankyrin repeat domain-containing protein 65

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Process Evidence Code Pubs
acts_upstream_of_or_within immune response IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
pentraxin-related protein PTX3
Names
pentraxin 3, long

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030681.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    115702849..115712001 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002933243.5 → XP_002933289.2  pentraxin-related protein PTX3

    UniProtKB/TrEMBL
    F6VKJ0
    Related
    ENSXETP00000026752.3, ENSXETT00000026752.4
    Conserved Domains (1) summary
    cl22861
    Location:217 → 420
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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