exd3 exonuclease 3'-5' domain containing 3 [Xenopus tropicalis (tropical clawed frog)] - Gene

Summary

Official Symbol: exd3provided by Xenbase
Official Full Name: exonuclease 3'-5' domain containing 3provided by Xenbase
Primary source: Xenbase:XB-GENE-6046956
See related: Ensembl:ENSXETG00000036246
Gene type: protein coding
RefSeq status: MODEL
Organism: Xenopus tropicalis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Orthologs: human all
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Genomic context

Location:: chromosome: 8

Exon count:: 21

Annotation release	Status	Assembly	Chr	Location
104	current	UCB_Xtro_10.0 (GCF_000004195.4)	8	NC_030684.2 (2916197..2960621, complement)
103	previous assembly	Xenopus_tropicalis_v9.1 (GCF_000004195.3)	8	NC_030684.1 (157252..173255, complement)

Chromosome 8 - NC_030684.2 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Homology

NCBI Orthologs

Orthologs from OrthoDB

Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables 3'-5' exonuclease activity	IEA Inferred from Electronic Annotation more info
enables RNA binding	IBA Inferred from Biological aspect of Ancestor more info
enables exonuclease activity	IEA Inferred from Electronic Annotation more info
enables nuclear export signal receptor activity	IBA Inferred from Biological aspect of Ancestor more info
enables nucleic acid binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in RNA export from nucleus	IBA Inferred from Biological aspect of Ancestor more info
acts_upstream_of_or_within nucleobase-containing compound metabolic process	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
part_of RNA nuclear export complex	IBA Inferred from Biological aspect of Ancestor more info
is_active_in cytoplasm	IBA Inferred from Biological aspect of Ancestor more info
is_active_in nucleus	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: exonuclease mut-7 homolog

Names: probable exonuclease mut-7 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

NC_030684.2 Reference UCB_Xtro_10.0 Primary Assembly

Range

2916197..2960621 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_031891518.1 → XP_031747378.1 exonuclease mut-7 homolog isoform X1

UniProtKB/TrEMBL

A0A6I8RBP8, A0A8J1IRL9

Conserved Domains (3) summary

COG0349
Location:526 → 636

Rnd; Ribonuclease D [Translation, ribosomal structure and biogenesis]

cl10012
Location:361 → 577

DnaQ_like_exo; DnaQ-like (or DEDD) 3'-5' exonuclease domain superfamily

cl19501
Location:636 → 730

Mut7-C; Mut7-C RNAse domain
XM_031891519.1 → XP_031747379.1 exonuclease mut-7 homolog isoform X1

UniProtKB/TrEMBL

A0A6I8RBP8, A0A8J1IRL9

Conserved Domains (3) summary

COG0349
Location:526 → 636

Rnd; Ribonuclease D [Translation, ribosomal structure and biogenesis]

cl10012
Location:361 → 577

DnaQ_like_exo; DnaQ-like (or DEDD) 3'-5' exonuclease domain superfamily

cl19501
Location:636 → 730

Mut7-C; Mut7-C RNAse domain
XM_031891521.1 → XP_031747381.1 exonuclease mut-7 homolog isoform X2

UniProtKB/TrEMBL

A0A6I8RBP8, A0A8J1ISB4

Related

ENSXETP00000078399.2, ENSXETT00000079552.2

Conserved Domains (3) summary

COG0349
Location:524 → 634

Rnd; Ribonuclease D [Translation, ribosomal structure and biogenesis]

cl10012
Location:359 → 575

DnaQ_like_exo; DnaQ-like (or DEDD) 3'-5' exonuclease domain superfamily

cl19501
Location:634 → 728

Mut7-C; Mut7-C RNAse domain
XM_031891522.1 → XP_031747382.1 exonuclease mut-7 homolog isoform X2

UniProtKB/TrEMBL

A0A6I8RBP8, A0A8J1ISB4

Related

ENSXETP00000113075.1, ENSXETT00000108804.1

Conserved Domains (3) summary

COG0349
Location:524 → 634

Rnd; Ribonuclease D [Translation, ribosomal structure and biogenesis]

cl10012
Location:359 → 575

DnaQ_like_exo; DnaQ-like (or DEDD) 3'-5' exonuclease domain superfamily

cl19501
Location:634 → 728

Mut7-C; Mut7-C RNAse domain
XM_031891523.1 → XP_031747383.1 exonuclease mut-7 homolog isoform X2

UniProtKB/TrEMBL

A0A6I8RBP8, A0A8J1ISB4

Conserved Domains (3) summary

COG0349
Location:524 → 634

Rnd; Ribonuclease D [Translation, ribosomal structure and biogenesis]

cl10012
Location:359 → 575

DnaQ_like_exo; DnaQ-like (or DEDD) 3'-5' exonuclease domain superfamily

cl19501
Location:634 → 728

Mut7-C; Mut7-C RNAse domain
XM_031891520.1 → XP_031747380.1 exonuclease mut-7 homolog isoform X1

UniProtKB/TrEMBL

A0A6I8RBP8, A0A8J1IRL9

Conserved Domains (3) summary

COG0349
Location:526 → 636

Rnd; Ribonuclease D [Translation, ribosomal structure and biogenesis]

cl10012
Location:361 → 577

DnaQ_like_exo; DnaQ-like (or DEDD) 3'-5' exonuclease domain superfamily

cl19501
Location:636 → 730

Mut7-C; Mut7-C RNAse domain