U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

pou1f1 POU class 1 homeobox 1 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100492413, updated on 8-Mar-2024

Summary

Go to the top of the page Help
Official Symbol
pou1f1provided by Xenbase
Official Full Name
POU class 1 homeobox 1provided by Xenbase
Primary source
Xenbase:XB-GENE-854097
See related
Ensembl:ENSXETG00000007637
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
pit1; GHF-3; pit-1
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 2
Exon count:
7
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 2 NC_030678.2 (22796820..22806154)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 2 NC_030678.1 (18631089..18640794)

Chromosome 2 - NC_030678.2Genomic Context describing neighboring genes Neighboring gene 5-hydroxytryptamine (serotonin) receptor 1F, G protein-coupled Neighboring gene protein spinster homolog 1-like Neighboring gene charged multivesicular body protein 2B Neighboring gene uncharacterized LOC116408761

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
  
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Preferred Names
pituitary-specific positive transcription factor 1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030678.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    22796820..22806154
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031896590.1 → XP_031752450.1  pituitary-specific positive transcription factor 1 isoform X1

    UniProtKB/TrEMBL
    A0A8J1J602, F6Q3K6
    Conserved Domains (2) summary
    smart00352
    Location:205 → 279
    POU; Found in Pit-Oct-Unc transcription factors
    pfam00046
    Location:298 → 352
    Homeobox; Homeobox domain

  2. XM_031896591.1 → XP_031752451.1  pituitary-specific positive transcription factor 1 isoform X2

    UniProtKB/TrEMBL
    A0A8J1J721, F6Q3K6
    Related
    ENSXETP00000016614.4, ENSXETT00000016614.5
    Conserved Domains (2) summary
    smart00352
    Location:178 → 252
    POU; Found in Pit-Oct-Unc transcription factors
    pfam00046
    Location:271 → 325
    Homeobox; Homeobox domain
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.