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tnpo1 transportin 1 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100492001, updated on 8-Mar-2024

Summary

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Official Symbol
tnpo1provided by Xenbase
Official Full Name
transportin 1provided by Xenbase
Primary source
Xenbase:XB-GENE-493792
See related
Ensembl:ENSXETG00000016812
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
mip; trn; ipo2; mip1; kpnb2
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
25
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 1 NC_030677.2 (182949808..182996358)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 1 NC_030677.1 (166797537..166841165, complement)

Chromosome 1 - NC_030677.2Genomic Context describing neighboring genes Neighboring gene mitochondrial ribosomal protein S27 Neighboring gene pentatricopeptide repeat domain 2 Neighboring gene zinc finger protein 366 Neighboring gene FCH and mu domain containing endocytic adaptor 2 Neighboring gene transmembrane protein 171

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables small GTPase binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within intracellular protein transport IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within protein import into nucleus IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
transportin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030677.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    182949808..182996358
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004910820.4 → XP_004910877.1  transportin-1 isoform X1

    UniProtKB/TrEMBL
    A0A6I8REM4, A0A6I8SEZ6
    Related
    ENSXETP00000091037.2, ENSXETT00000100886.2
    Conserved Domains (2) summary
    COG5215
    Location:24 → 787
    KAP95; Karyopherin (importin) beta [Intracellular trafficking and secretion]
    sd00044
    Location:95 → 116
    HEAT; HEAT repeat [structural motif]

  2. XM_002934838.5 → XP_002934884.2  transportin-1 isoform X2

    UniProtKB/TrEMBL
    A0A8J0QQ75, F6ZF74
    Related
    ENSXETP00000036652.4, ENSXETT00000036652.5
    Conserved Domains (2) summary
    COG5215
    Location:24 → 759
    KAP95; Karyopherin (importin) beta [Intracellular trafficking and secretion]
    sd00044
    Location:95 → 116
    HEAT; HEAT repeat [structural motif]
Nucleotide Protein Strain
Heading Accession and Version

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