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pprc1 peroxisome proliferator-activated receptor gamma, coactivator-related 1 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100488852, updated on 8-Mar-2024

Summary

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Official Symbol
pprc1provided by Xenbase
Official Full Name
peroxisome proliferator-activated receptor gamma, coactivator-related 1provided by Xenbase
Primary source
Xenbase:XB-GENE-6469512
See related
Ensembl:ENSXETG00000037399
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
prc
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 7
Exon count:
14
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 7 NC_030683.2 (32127538..32151007)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 7 NC_030683.1 (23770760..23794573)

Chromosome 7 - NC_030683.2Genomic Context describing neighboring genes Neighboring gene prominin 3 Neighboring gene LIM domain binding 1 Neighboring gene ligand dependent nuclear receptor corepressor Neighboring gene slit guidance ligand 1 Neighboring gene uncharacterized LOC105948021

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
  
enables transcription coregulator activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
peroxisome proliferator-activated receptor gamma coactivator-related protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030683.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    32127538..32151007
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004915864.4 → XP_004915921.2  peroxisome proliferator-activated receptor gamma coactivator-related protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A6I8SFT2, A0A8J0R0U9
    Related
    ENSXETP00000101601.2, ENSXETT00000079608.2
    Conserved Domains (1) summary
    cd12624
    Location:1594 → 1684
    RRM_PRC; RNA recognition motif (RRM) found in peroxisome proliferator-activated receptor gamma coactivator-related protein 1 (PRC) and similar proteins

  2. XM_004915863.4 → XP_004915920.2  peroxisome proliferator-activated receptor gamma coactivator-related protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A6I8RN86, A0A6I8SFT2
    Related
    ENSXETP00000082105.2, ENSXETT00000085306.2
    Conserved Domains (1) summary
    cd12624
    Location:1612 → 1702
    RRM_PRC; RNA recognition motif (RRM) found in peroxisome proliferator-activated receptor gamma coactivator-related protein 1 (PRC) and similar proteins
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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