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gatad2b GATA zinc finger domain containing 2B [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100486823, updated on 8-Mar-2024

Summary

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Official Symbol
gatad2bprovided by Xenbase
Official Full Name
GATA zinc finger domain containing 2Bprovided by Xenbase
Primary source
Xenbase:XB-GENE-5995517
See related
Ensembl:ENSXETG00000019921
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 8
Exon count:
13
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 8 NC_030684.2 (144339662..144369185, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) Unplaced Scaffold NW_016683934.1 (15320..49315, complement)

Chromosome 8 - NC_030684.2Genomic Context describing neighboring genes Neighboring gene integrator complex subunit 3 Neighboring gene solute carrier family 27 member 3 Neighboring gene uncharacterized LOC116406707 Neighboring gene DNA-directed RNA polymerase II subunit RPB1-like Neighboring gene DENN/MADD domain containing 4B Neighboring gene CREB regulated transcription coactivator 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
transcriptional repressor p66-beta

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030684.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    144339662..144369185 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031890632.1 → XP_031746492.1  transcriptional repressor p66-beta

    UniProtKB/TrEMBL
    A0A803KAN5, F6XFN7
    Related
    ENSXETP00000043100.6, ENSXETT00000043100.6
    Conserved Domains (2) summary
    pfam00320
    Location:416 → 450
    GATA; GATA zinc finger
    pfam16563
    Location:157 → 192
    P66_CC; Coiled-coil and interaction region of P66A and P66B with MBD2

  2. XM_031890633.1 → XP_031746493.1  transcriptional repressor p66-beta

    UniProtKB/TrEMBL
    A0A803KAN5, F6XFN7
    Conserved Domains (2) summary
    pfam00320
    Location:416 → 450
    GATA; GATA zinc finger
    pfam16563
    Location:157 → 192
    P66_CC; Coiled-coil and interaction region of P66A and P66B with MBD2

  3. XM_031890634.1 → XP_031746494.1  transcriptional repressor p66-beta

    UniProtKB/TrEMBL
    A0A803KAN5, F6XFN7
    Conserved Domains (2) summary
    pfam00320
    Location:416 → 450
    GATA; GATA zinc finger
    pfam16563
    Location:157 → 192
    P66_CC; Coiled-coil and interaction region of P66A and P66B with MBD2
Nucleotide Protein Strain
Heading Accession and Version

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