U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

srebf1 sterol regulatory element binding transcription factor 1 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100485631, updated on 8-Mar-2024

Summary

Go to the top of the page Help
Official Symbol
srebf1provided by Xenbase
Official Full Name
sterol regulatory element binding transcription factor 1provided by Xenbase
Primary source
Xenbase:XB-GENE-987572
See related
Ensembl:ENSXETG00000012160
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
srebp1
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 9
Exon count:
20
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 9 NC_030685.2 (15371966..15393817)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 9 NC_030685.1 (9590533..9611417)

Chromosome 9 - NC_030685.2Genomic Context describing neighboring genes Neighboring gene target of myb1 like 2 membrane trafficking protein Neighboring gene uncharacterized LOC116407703 Neighboring gene microRNA mir-33a Neighboring gene retinoic acid induced 1 Neighboring gene phosphatidylethanolamine N-methyltransferase

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in ER to Golgi transport vesicle membrane IEA
Inferred from Electronic Annotation
more info
  
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
  
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Preferred Names
sterol regulatory element-binding protein 1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030685.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    15371966..15393817
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002935840.5 → XP_002935886.2  sterol regulatory element-binding protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A6I8R5C1
    Related
    ENSXETP00000077144.2, ENSXETT00000091953.2
    Conserved Domains (2) summary
    cd18921
    Location:404 → 478
    bHLHzip_SREBP1; basic Helix-Loop-Helix-zipper (bHLHzip) domain found in sterol regulatory element-binding protein 1 (SREBP1) and similar proteins
    cl41773
    Location:86 → 404
    SP1-4_N; N-terminal domain of transcription factor Specificity Proteins (SP) 1-4

  2. XM_012971249.3 → XP_012826703.2  sterol regulatory element-binding protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A8J0SY78
    Conserved Domains (2) summary
    cd18921
    Location:404 → 478
    bHLHzip_SREBP1; basic Helix-Loop-Helix-zipper (bHLHzip) domain found in sterol regulatory element-binding protein 1 (SREBP1) and similar proteins
    cl41773
    Location:86 → 404
    SP1-4_N; N-terminal domain of transcription factor Specificity Proteins (SP) 1-4

  3. XM_004918077.4 → XP_004918134.2  sterol regulatory element-binding protein 1 isoform X4

    UniProtKB/TrEMBL
    A0A6I8QQD3
    Related
    ENSXETP00000070641.2, ENSXETT00000075777.2
    Conserved Domains (2) summary
    pfam03157
    Location:99 → 318
    Glutenin_hmw; High molecular weight glutenin subunit
    cd18921
    Location:404 → 478
    bHLHzip_SREBP1; basic Helix-Loop-Helix-zipper (bHLHzip) domain found in sterol regulatory element-binding protein 1 (SREBP1) and similar proteins

  4. XM_002935841.5 → XP_002935887.2  sterol regulatory element-binding protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A6I8R205
    Related
    ENSXETP00000075334.2, ENSXETT00000079250.2
    Conserved Domains (2) summary
    pfam09606
    Location:43 → 301
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    cd18921
    Location:375 → 449
    bHLHzip_SREBP1; basic Helix-Loop-Helix-zipper (bHLHzip) domain found in sterol regulatory element-binding protein 1 (SREBP1) and similar proteins
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.