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PTP4A1 protein tyrosine phosphatase 4A1 [ Ailuropoda melanoleuca (giant panda) ]

Gene ID: 100483032, updated on 8-Mar-2024

Summary

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Gene symbol
PTP4A1
Gene description
protein tyrosine phosphatase 4A1
Locus tag
PANDA_015612
See related
Ensembl:ENSAMEG00000002438
Gene type
protein coding
RefSeq status
MODEL
Organism
Ailuropoda melanoleuca
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Ursidae; Ailuropoda
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 19
Exon count:
5
Annotation release Status Assembly Chr Location
103 current ASM200744v2 (GCF_002007445.1) 19 NC_048236.1 (17127945..17132622)
102 previous assembly AilMel_1.0 (GCF_000004335.2) Unplaced Scaffold NW_003218317.1 (452847..457953, complement)

Chromosome 19 - NC_048236.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene translation initiation factor IF-2-like Neighboring gene uncharacterized LOC105240574 Neighboring gene PHD finger protein 3 Neighboring gene eyes shut homolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The sequence and de novo assembly of the giant panda genome. Li R, et al. Nature, 2010 Jan 21. PMID 20010809, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein tyrosine/serine/threonine phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: protein tyrosine phosphatase type IVA 1
Names
protein tyrosine phosphatase type IVA, member 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ailuropoda melanoleuca Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM200744v2 Primary Assembly

Genomic

  1. NC_048236.1 Reference ASM200744v2 Primary Assembly

    Range
    17127945..17132622
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019806668.2 → XP_019662227.1  LOW QUALITY PROTEIN: protein tyrosine phosphatase type IVA 1

    UniProtKB/TrEMBL
    D2HTT0
    Related
    ENSAMEP00000002560.2, ENSAMET00000002671.2
    Conserved Domains (1) summary
    cd18537
    Location:1 → 167
    PTP-IVa1; protein tyrosine phosphatase type IVA 1
Nucleotide Protein
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