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SNF8 SNF8 subunit of ESCRT-II [ Ailuropoda melanoleuca (giant panda) ]

Gene ID: 100476047, updated on 8-Mar-2024

Summary

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Gene symbol
SNF8
Gene description
SNF8 subunit of ESCRT-II
Locus tag
PANDA_005024
See related
Ensembl:ENSAMEG00000005062
Gene type
protein coding
RefSeq status
MODEL
Organism
Ailuropoda melanoleuca
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Ursidae; Ailuropoda
Orthologs
human mouse all
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Genomic context

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See SNF8 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
8
Annotation release Status Assembly Chr Location
103 current ASM200744v2 (GCF_002007445.1) 13 NC_048230.1 (21957719..21966322)
102 previous assembly AilMel_1.0 (GCF_000004335.2) Unplaced Scaffold NW_003217447.1 (2143601..2152125, complement)

Chromosome 13 - NC_048230.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene gastric inhibitory polypeptide Neighboring gene ubiquitin conjugating enzyme E2 Z Neighboring gene ATP synthase membrane subunit c locus 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of ESCRT II complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
vacuolar-sorting protein SNF8
Names
SNF8, ESCRT-II complex subunit

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ailuropoda melanoleuca Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM200744v2 Primary Assembly

Genomic

  1. NC_048230.1 Reference ASM200744v2 Primary Assembly

    Range
    21957719..21966322
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002916826.4 → XP_002916872.1  vacuolar-sorting protein SNF8 isoform X1

    UniProtKB/TrEMBL
    A0A7N5P2R1, G1LEM3
    Related
    ENSAMEP00000005360.1, ENSAMET00000005582.2
    Conserved Domains (1) summary
    pfam04157
    Location:7 → 225
    EAP30; EAP30/Vps36 family

  2. XM_034641800.1 → XP_034497691.1  vacuolar-sorting protein SNF8 isoform X2

  3. XM_034641801.1 → XP_034497692.1  vacuolar-sorting protein SNF8 isoform X3

    UniProtKB/TrEMBL
    D2H575
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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