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PPARA peroxisome proliferator activated receptor alpha [ Ailuropoda melanoleuca (giant panda) ]

Gene ID: 100474723, updated on 8-Mar-2024

Summary

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Gene symbol
PPARA
Gene description
peroxisome proliferator activated receptor alpha
Locus tag
PANDA_011925
See related
Ensembl:ENSAMEG00000003383
Gene type
protein coding
RefSeq status
MODEL
Organism
Ailuropoda melanoleuca
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Ursidae; Ailuropoda
Orthologs
human mouse all
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Genomic context

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See PPARA in Genome Data Viewer
Location:
chromosome: 15
Exon count:
8
Annotation release Status Assembly Chr Location
103 current ASM200744v2 (GCF_002007445.1) 15 NC_048232.1 (87851379..87917694)
102 previous assembly AilMel_1.0 (GCF_000004335.2) Unplaced Scaffold NW_003217912.1 (604535..665655, complement)

Chromosome 15 - NC_048232.1Genomic Context describing neighboring genes Neighboring gene Wnt family member 7B Neighboring gene uncharacterized LOC109490159 Neighboring gene uncharacterized LOC117796468 Neighboring gene cysteine rich DPF motif domain containing 1 Neighboring gene polycystin family receptor for egg jelly

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The sequence and de novo assembly of the giant panda genome. Li R, et al. Nature, 2010 Jan 21. PMID 20010809, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nuclear receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in hormone-mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of inflammatory response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of lipid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
peroxisome proliferator-activated receptor alpha

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ailuropoda melanoleuca Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM200744v2 Primary Assembly

Genomic

  1. NC_048232.1 Reference ASM200744v2 Primary Assembly

    Range
    87851379..87917694
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034643451.1 → XP_034499342.1  peroxisome proliferator-activated receptor alpha isoform X1

    UniProtKB/TrEMBL
    D2HKK7, G1L9P3
    Related
    ENSAMEP00000003616.2, ENSAMET00000003761.2

  2. XM_011229417.3 → XP_011227719.2  peroxisome proliferator-activated receptor alpha isoform X1

    UniProtKB/TrEMBL
    D2HKK7, G1L9P3

  3. XM_011229416.3 → XP_011227718.1  peroxisome proliferator-activated receptor alpha isoform X2

    Conserved Domains (2) summary
    cd06932
    Location:173 → 439
    NR_LBD_PPAR; The ligand binding domain of peroxisome proliferator-activated receptors
    cd06965
    Location:73 → 156
    NR_DBD_Ppar; DNA-binding domain of peroxisome proliferator-activated receptors (PPAR) is composed of two C4-type zinc fingers
Nucleotide Protein
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