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ESRRA estrogen related receptor alpha [ Ailuropoda melanoleuca (giant panda) ]

Gene ID: 100473687, updated on 8-Mar-2024

Summary

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Gene symbol
ESRRA
Gene description
estrogen related receptor alpha
Locus tag
PANDA_004846
See related
Ensembl:ENSAMEG00000017967
Gene type
protein coding
RefSeq status
MODEL
Organism
Ailuropoda melanoleuca
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Ursidae; Ailuropoda
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 16
Exon count:
8
Annotation release Status Assembly Chr Location
103 current ASM200744v2 (GCF_002007445.1) 16 NC_048233.1 (83233662..83241520)
102 previous assembly AilMel_1.0 (GCF_000004335.2) Unplaced Scaffold NW_003217442.1 (1729669..1754533, complement)

Chromosome 16 - NC_048233.1Genomic Context describing neighboring genes Neighboring gene potassium two pore domain channel subfamily K member 4 Neighboring gene catsper channel auxiliary subunit zeta Neighboring gene tRNA methyltransferase activator subunit 11-2 Neighboring gene peroxiredoxin 5 Neighboring gene uncharacterized LOC117796700 Neighboring gene coiled-coil domain containing 88B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The sequence and de novo assembly of the giant panda genome. Li R, et al. Nature, 2010 Jan 21. PMID 20010809, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nuclear steroid receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables steroid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
steroid hormone receptor ERR1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ailuropoda melanoleuca Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM200744v2 Primary Assembly

Genomic

  1. NC_048233.1 Reference ASM200744v2 Primary Assembly

    Range
    83233662..83241520
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034645586.1 → XP_034501477.1  steroid hormone receptor ERR1

    UniProtKB/TrEMBL
    D2H4T5, G1MHZ6
    Related
    ENSAMEP00000018981.2, ENSAMET00000019742.2
    Conserved Domains (2) summary
    cd06946
    Location:196 → 419
    NR_LBD_ERR; The ligand binding domain of estrogen receptor-related nuclear receptors
    cd07170
    Location:73 → 168
    NR_DBD_ERR; DNA-binding domain of estrogen related receptors (ERR) is composed of two C4-type zinc fingers

  2. XM_034645587.1 → XP_034501478.1  steroid hormone receptor ERR1

    UniProtKB/TrEMBL
    D2H4T5, G1MHZ6
    Conserved Domains (2) summary
    cd06946
    Location:196 → 419
    NR_LBD_ERR; The ligand binding domain of estrogen receptor-related nuclear receptors
    cd07170
    Location:73 → 168
    NR_DBD_ERR; DNA-binding domain of estrogen related receptors (ERR) is composed of two C4-type zinc fingers
Nucleotide Protein
Heading Accession and Version

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