U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

PLOD1 procollagen-lysine,2-oxoglutarate 5-dioxygenase 1 [ Ailuropoda melanoleuca (giant panda) ]

Gene ID: 100472371, updated on 8-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
PLOD1
Gene description
procollagen-lysine,2-oxoglutarate 5-dioxygenase 1
Locus tag
PANDA_011823
See related
Ensembl:ENSAMEG00000009887
Gene type
protein coding
RefSeq status
MODEL
Organism
Ailuropoda melanoleuca
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Ursidae; Ailuropoda
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See PLOD1 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
19
Annotation release Status Assembly Chr Location
103 current ASM200744v2 (GCF_002007445.1) 11 NC_048228.1 (8737289..8762595)
102 previous assembly AilMel_1.0 (GCF_000004335.2) Unplaced Scaffold NW_003217892.1 (790405..807989)

Chromosome 11 - NC_048228.1Genomic Context describing neighboring genes Neighboring gene U5 spliceosomal RNA Neighboring gene KIAA2013 ortholog Neighboring gene mitofusin 2 Neighboring gene migration and invasion inhibitory protein

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables L-ascorbic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables procollagen-lysine 5-dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptidyl-lysine hydroxylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
procollagen-lysine,2-oxoglutarate 5-dioxygenase 1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Ailuropoda melanoleuca Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM200744v2 Primary Assembly

Genomic

  1. NC_048228.1 Reference ASM200744v2 Primary Assembly

    Range
    8737289..8762595
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034671211.1 → XP_034527102.1  procollagen-lysine,2-oxoglutarate 5-dioxygenase 1

    UniProtKB/TrEMBL
    D2HKC3
    Related
    ENSAMEP00000010531.2, ENSAMET00000010987.2
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.