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TSGA10 testis specific 10 [ Pongo abelii (Sumatran orangutan) ]

Gene ID: 100458245, updated on 26-Mar-2024

Summary

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Gene symbol
TSGA10
Gene description
testis specific 10
Locus tag
CR201_G0050563
See related
Ensembl:ENSPPYG00000012089
Gene type
protein coding
RefSeq status
MODEL
Organism
Pongo abelii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pongo
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 12
Exon count:
26
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPonAbe1-v2.0_pri (GCF_028885655.2) 12 NC_071997.2 (27591692..27761134, complement)
RS_2023_04 previous assembly NHGRI_mPonAbe1-v1.1-hic.freeze_pri (GCF_028885655.1) 2A NC_071986.1 (24177138..24346580, complement)

Chromosome 12 - NC_071997.2Genomic Context describing neighboring genes Neighboring gene U4 spliceosomal RNA Neighboring gene CRACD like Neighboring gene U7 small nuclear RNA Neighboring gene uncharacterized LOC129057511 Neighboring gene chromosome 12 C2orf15 homolog Neighboring gene MIT domain-containing protein 1 Neighboring gene uncharacterized LOC129057512 Neighboring gene lipoyltransferase 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
testis-specific gene 10 protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028885655.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

Genomic

  1. NC_071997.2 Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

    Range
    27591692..27761134 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024242280.2 → XP_024098048.1  testis-specific gene 10 protein isoform X10

    UniProtKB/TrEMBL
    H2P568
    Conserved Domains (1) summary
    cl25732
    Location:140 → 504
    SMC_N; RecF/RecN/SMC N terminal domain

  2. XM_063713356.1 → XP_063569426.1  testis-specific gene 10 protein isoform X11

  3. XM_024242282.2 → XP_024098050.1  testis-specific gene 10 protein isoform X10

    UniProtKB/TrEMBL
    H2P568
    Conserved Domains (1) summary
    cl25732
    Location:140 → 504
    SMC_N; RecF/RecN/SMC N terminal domain

  4. XM_063713358.1 → XP_063569428.1  testis-specific gene 10 protein isoform X13

  5. XM_024242281.2 → XP_024098049.1  testis-specific gene 10 protein isoform X10

    UniProtKB/TrEMBL
    H2P568
    Conserved Domains (1) summary
    cl25732
    Location:140 → 504
    SMC_N; RecF/RecN/SMC N terminal domain

  6. XM_063713357.1 → XP_063569427.1  testis-specific gene 10 protein isoform X12

  7. XM_063713355.1 → XP_063569425.1  testis-specific gene 10 protein isoform X11

  8. XM_024242276.2 → XP_024098044.1  testis-specific gene 10 protein isoform X10

    UniProtKB/TrEMBL
    H2P568
    Conserved Domains (1) summary
    cl25732
    Location:140 → 504
    SMC_N; RecF/RecN/SMC N terminal domain

  9. XM_054547307.1 → XP_054403282.1  testis-specific gene 10 protein isoform X10

    UniProtKB/TrEMBL
    H2P568

  10. XM_024242266.3 → XP_024098034.1  testis-specific gene 10 protein isoform X1

    Conserved Domains (1) summary
    cl25732
    Location:335 → 699
    SMC_N; RecF/RecN/SMC N terminal domain

  11. XM_054547305.2 → XP_054403280.1  testis-specific gene 10 protein isoform X8

  12. XM_024242273.3 → XP_024098041.1  testis-specific gene 10 protein isoform X7

    Conserved Domains (1) summary
    cl25732
    Location:409 → 685
    SMC_N; RecF/RecN/SMC N terminal domain

  13. XM_024242268.3 → XP_024098036.1  testis-specific gene 10 protein isoform X2

    Conserved Domains (1) summary
    cl25732
    Location:335 → 662
    SMC_N; RecF/RecN/SMC N terminal domain

  14. XM_024242271.3 → XP_024098039.1  testis-specific gene 10 protein isoform X5

    Conserved Domains (2) summary
    cl25732
    Location:418 → 681
    SMC_N; RecF/RecN/SMC N terminal domain
    cl26472
    Location:607 → 776
    DUF3084; Protein of unknown function (DUF3084)

  15. XM_024242269.3 → XP_024098037.1  testis-specific gene 10 protein isoform X3

    Conserved Domains (1) summary
    cl25732
    Location:292 → 656
    SMC_N; RecF/RecN/SMC N terminal domain

  16. XM_024242272.3 → XP_024098040.1  testis-specific gene 10 protein isoform X6

    Conserved Domains (1) summary
    cl25732
    Location:45 → 757
    SMC_N; RecF/RecN/SMC N terminal domain

  17. XM_054547308.2 → XP_054403283.1  testis-specific gene 10 protein isoform X10

    UniProtKB/TrEMBL
    H2P568

  18. XM_054547309.1 → XP_054403284.1  testis-specific gene 10 protein isoform X10

    UniProtKB/TrEMBL
    H2P568

  19. XM_024242275.2 → XP_024098043.1  testis-specific gene 10 protein isoform X10

    UniProtKB/TrEMBL
    H2P568
    Conserved Domains (1) summary
    cl25732
    Location:140 → 504
    SMC_N; RecF/RecN/SMC N terminal domain

  20. XM_054547303.2 → XP_054403278.1  testis-specific gene 10 protein isoform X4

  21. XM_054547306.2 → XP_054403281.1  testis-specific gene 10 protein isoform X9

Nucleotide Protein
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