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CLN3 CLN3 lysosomal/endosomal transmembrane protein, battenin [ Pongo abelii (Sumatran orangutan) ]

Gene ID: 100457403, updated on 3-Apr-2024

Summary

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Gene symbol
CLN3
Gene description
CLN3 lysosomal/endosomal transmembrane protein, battenin
Locus tag
CR201_G0034379
See related
Ensembl:ENSPPYG00000007229
Gene type
protein coding
RefSeq status
MODEL
Organism
Pongo abelii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pongo
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 18
Exon count:
18
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPonAbe1-v2.0_pri (GCF_028885655.2) 18 NC_072003.2 (31781854..31799362, complement)
RS_2023_04 previous assembly NHGRI_mPonAbe1-v1.1-hic.freeze_pri (GCF_028885655.1) 16 NC_072001.1 (31192759..31210265, complement)

Chromosome 18 - NC_072003.2Genomic Context describing neighboring genes Neighboring gene eukaryotic translation initiation factor 3, subunit C Neighboring gene hsp90 co-chaperone Cdc37-like Neighboring gene apolipoprotein B receptor Neighboring gene SAGA complex associated factor 29 Neighboring gene interleukin 27

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in lysosomal lumen acidification IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lysosome organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in lysosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
battenin
Names
CLN3, battenin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028885655.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

Genomic

  1. NC_072003.2 Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

    Range
    31781854..31799362 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054533749.2 → XP_054389724.1  battenin isoform X1

  2. XM_054533751.2 → XP_054389726.1  battenin isoform X1

  3. XM_063717251.1 → XP_063573321.1  battenin isoform X3

    UniProtKB/TrEMBL
    A0A2J8TJR8, A0A6D2XMZ0, H2NQI8

  4. XM_009250592.4 → XP_009248867.1  battenin isoform X1

    See identical proteins and their annotated locations for XP_009248867.1

    UniProtKB/TrEMBL
    A0A8I5TU68
    Conserved Domains (1) summary
    pfam02487
    Location:91 → 488
    CLN3; CLN3 protein

  5. XM_054533756.2 → XP_054389731.1  battenin isoform X6

    UniProtKB/TrEMBL
    A0A8I5T035

  6. XM_054533753.2 → XP_054389728.1  battenin isoform X3

    UniProtKB/TrEMBL
    A0A2J8TJR8, A0A6D2XMZ0, H2NQI8

  7. XM_054533752.2 → XP_054389727.1  battenin isoform X2

  8. XM_009250591.3 → XP_009248866.1  battenin isoform X1

    See identical proteins and their annotated locations for XP_009248866.1

    UniProtKB/TrEMBL
    A0A8I5TU68
    Conserved Domains (1) summary
    pfam02487
    Location:91 → 488
    CLN3; CLN3 protein

  9. XM_054533757.2 → XP_054389732.1  battenin isoform X7

  10. XM_054533754.2 → XP_054389729.1  battenin isoform X4

  11. XM_054533755.2 → XP_054389730.1  battenin isoform X5

Nucleotide Protein
Heading Accession and Version

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