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SPATA46 spermatogenesis associated 46 [ Pongo abelii (Sumatran orangutan) ]

Gene ID: 100448613, updated on 26-Mar-2024

Summary

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Gene symbol
SPATA46
Gene description
spermatogenesis associated 46
Locus tag
CR201_G0042068
See related
Ensembl:ENSPPYG00000000586
Gene type
protein coding
RefSeq status
MODEL
Organism
Pongo abelii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pongo
Also known as
C1H1orf111
Orthologs
human mouse all
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Genomic context

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See SPATA46 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPonAbe1-v2.0_pri (GCF_028885655.2) 1 NC_071985.2 (87865019..87867887)
RS_2023_04 previous assembly NHGRI_mPonAbe1-v1.1-hic.freeze_pri (GCF_028885655.1) 1 NC_071985.1 (87864993..87867865)

Chromosome 1 - NC_071985.2Genomic Context describing neighboring genes Neighboring gene SLAM family member 9 Neighboring gene chromosome 1 C1orf226 homolog Neighboring gene SH2 domain containing 1B Neighboring gene olfactomedin like 2B Neighboring gene proteasome activator complex subunit 3-like Neighboring gene activating transcription factor 6

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in fertilization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nuclear membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
spermatogenesis-associated protein 46

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028885655.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

Genomic

  1. NC_071985.2 Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

    Range
    87865019..87867887
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054526467.2 → XP_054382442.1  spermatogenesis-associated protein 46 isoform X3

  2. XM_003775508.3 → XP_003775556.1  spermatogenesis-associated protein 46 isoform X2

    UniProtKB/TrEMBL
    A0A2J8SLD2, H2N4Z3
    Related
    ENSPPYP00000000685.2

  3. XM_054526456.1 → XP_054382431.1  spermatogenesis-associated protein 46 isoform X1

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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