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SDCCAG8 SHH signaling and ciliogenesis regulator SDCCAG8 [ Pongo abelii (Sumatran orangutan) ]

Gene ID: 100447735, updated on 26-Mar-2024

Summary

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Gene symbol
SDCCAG8
Gene description
SHH signaling and ciliogenesis regulator SDCCAG8
Locus tag
CR201_G0035839
See related
Ensembl:ENSPPYG00000000061
Gene type
protein coding
RefSeq status
MODEL
Organism
Pongo abelii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pongo
Orthologs
human mouse all
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Genomic context

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See SDCCAG8 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
19
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPonAbe1-v2.0_pri (GCF_028885655.2) 1 NC_071985.2 (5594292..5859788, complement)
RS_2023_04 previous assembly NHGRI_mPonAbe1-v1.1-hic.freeze_pri (GCF_028885655.1) 1 NC_071985.1 (5598226..5859880, complement)

Chromosome 1 - NC_071985.2Genomic Context describing neighboring genes Neighboring gene zinc finger and BTB domain containing 18 Neighboring gene uncharacterized LOC129058220 Neighboring gene AKT serine/threonine kinase 3 Neighboring gene rRNA-processing protein FCF1 homolog Neighboring gene centrosomal protein 170 Neighboring gene uncharacterized LOC100449911

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in centrosome cycle IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in establishment of cell polarity IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neuron migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in tube formation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in centriole IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in centrosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
serologically defined colon cancer antigen 8

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028885655.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

Genomic

  1. NC_071985.2 Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

    Range
    5594292..5859788 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054550178.2 → XP_054406153.1  serologically defined colon cancer antigen 8 isoform X3

  2. XM_054550173.2 → XP_054406148.1  serologically defined colon cancer antigen 8 isoform X1

  3. XM_009247821.4 → XP_009246096.2  serologically defined colon cancer antigen 8 isoform X4

  4. XM_002809243.6 → XP_002809289.2  serologically defined colon cancer antigen 8 isoform X2

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
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