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CLDN1 claudin 1 [ Pongo abelii (Sumatran orangutan) ]

Gene ID: 100446558, updated on 26-Mar-2024

Summary

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Gene symbol
CLDN1
Gene description
claudin 1
Locus tag
CR201_G0010717
See related
Ensembl:ENSPPYG00000014402
Gene type
protein coding
RefSeq status
MODEL
Organism
Pongo abelii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pongo
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 2
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPonAbe1-v2.0_pri (GCF_028885655.2) 2 NC_085928.1 (200297132..200336908, complement)
RS_2023_04 previous assembly NHGRI_mPonAbe1-v1.1-hic.freeze_pri (GCF_028885655.1) 3 NC_071988.1 (188079903..188094169, complement)

Chromosome 2 - NC_085928.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene nicotinamide/nicotinic acid mononucleotide adenylyltransferase 1-like Neighboring gene claudin 16 Neighboring gene transmembrane protein 207 Neighboring gene interleukin 1 receptor accessory protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables structural molecule activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in bicellular tight junction assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in bicellular tight junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
claudin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028885655.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

Genomic

  1. NC_085928.1 Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

    Range
    200297132..200336908 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002814413.6 → XP_002814459.1  claudin-1

    See identical proteins and their annotated locations for XP_002814459.1

    UniProtKB/TrEMBL
    A0A2J8WI30, A0A6D2XE39, H2PCB8
    Related
    ENSPPYP00000016107.2
    Conserved Domains (1) summary
    pfam00822
    Location:5 → 173
    PMP22_Claudin; PMP-22/EMP/MP20/Claudin family
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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