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TSHZ2 teashirt zinc finger homeobox 2 [ Pongo abelii (Sumatran orangutan) ]

Gene ID: 100438156, updated on 3-Apr-2024

Summary

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Gene symbol
TSHZ2
Gene description
teashirt zinc finger homeobox 2
Locus tag
CR201_G0050012
See related
Ensembl:ENSPPYG00000011269
Gene type
protein coding
RefSeq status
MODEL
Organism
Pongo abelii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pongo
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 21
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPonAbe1-v2.0_pri (GCF_028885655.2) 21 NC_072006.2 (57335056..57854515)
RS_2023_04 previous assembly NHGRI_mPonAbe1-v1.1-hic.freeze_pri (GCF_028885655.1) 20 NC_072005.1 (51245940..51765347)

Chromosome 21 - NC_072006.2Genomic Context describing neighboring genes Neighboring gene 10 kDa heat shock protein, mitochondrial-like Neighboring gene uncharacterized LOC129052153 Neighboring gene uncharacterized LOC129052154 Neighboring gene uncharacterized LOC129052155 Neighboring gene uncharacterized LOC112130341 Neighboring gene zinc finger protein 217

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
teashirt homolog 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028885655.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

Genomic

  1. NC_072006.2 Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

    Range
    57335056..57854515
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054541873.2 → XP_054397848.1  teashirt homolog 2 isoform X1

    UniProtKB/TrEMBL
    A0A2J8RLE7, H2P2Q0

  2. XM_063720559.1 → XP_063576629.1  teashirt homolog 2 isoform X1

    UniProtKB/TrEMBL
    A0A2J8RLE7, H2P2Q0

  3. XM_024238960.3 → XP_024094728.1  teashirt homolog 2 isoform X2

    UniProtKB/TrEMBL
    A0A2J8RLA8
    Conserved Domains (2) summary
    cd00086
    Location:842 → 910
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
    sd00020
    Location:217 → 239
    ZF_C2H2; C2H2 Zn finger [structural motif]
Nucleotide Protein
Heading Accession and Version

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