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TERMP_01956 ATP-dependent DNA ligase [ Thermococcus barophilus MP ]

Gene ID: 10042271, updated on 6-Jul-2014
Gene symbol
TERMP_01956
Gene description
ATP-dependent DNA ligase
Locus tag
TERMP_01956
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Thermococcus barophilus MP (strain: MP, culture-collection: CNCM:CNCMI 1946)
Lineage
Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Thermococcus
Sequence:
NC_014804.1 (1749695..1751380, complement)

NC_014804.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene septum site-determining MinD-like protein Neighboring gene orotate phosphoribosyltransferase Neighboring gene pantoate kinase Neighboring gene hypothetical protein

  • Base excision repair, organism-specific biosystem (from KEGG)
    Base excision repair, organism-specific biosystemBase excision repair (BER) is the predominant DNA damage repair pathway for the processing of small base lesions, derived from oxidation and alkylation damages. BER is normally defined as DNA repair ...
  • Base excision repair, conserved biosystem (from KEGG)
    Base excision repair, conserved biosystemBase excision repair (BER) is the predominant DNA damage repair pathway for the processing of small base lesions, derived from oxidation and alkylation damages. BER is normally defined as DNA repair ...
  • DNA replication, organism-specific biosystem (from KEGG)
    DNA replication, organism-specific biosystemA complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (D...
  • DNA replication, conserved biosystem (from KEGG)
    DNA replication, conserved biosystemA complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (D...
  • Mismatch repair, organism-specific biosystem (from KEGG)
    Mismatch repair, organism-specific biosystemDNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preven...
  • Mismatch repair, conserved biosystem (from KEGG)
    Mismatch repair, conserved biosystemDNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preven...
  • Nucleotide excision repair, organism-specific biosystem (from KEGG)
    Nucleotide excision repair, organism-specific biosystemNucleotide excision repair (NER) is a mechanism to recognize and repair bulky DNA damage caused by compounds, environmental carcinogens, and exposure to UV-light. In humans hereditary defects in the ...
  • Nucleotide excision repair, conserved biosystem (from KEGG)
    Nucleotide excision repair, conserved biosystemNucleotide excision repair (NER) is a mechanism to recognize and repair bulky DNA damage caused by compounds, environmental carcinogens, and exposure to UV-light. In humans hereditary defects in the ...

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_014804.1 

    Range
    1749695..1751380
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. YP_004072153.1 ATP-dependent DNA ligase [Thermococcus barophilus MP]

    See proteins identical to YP_004072153.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    F0LL23
    Conserved Domains (4) summary
    cd07972
    Location:427548
    OBF_DNA_ligase_Arch_LigB; The Oligonucleotide/oligosaccharide binding (OB)-fold domain of archaeal and bacterial ATP-dependent DNA ligases is a DNA-binding module that is part of the catalytic core unit
    cd07901
    Location:219425
    Adenylation_DNA_ligase_Arch_LigB; Adenylation domain of archaeal and bacterial LigB-like DNA ligases
    PRK01109
    Location:1560
    PRK01109; ATP-dependent DNA ligase; Provisional
    pfam04675
    Location:1178
    DNA_ligase_A_N; DNA ligase N terminus