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VPS37A VPS37A subunit of ESCRT-I [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100415040, updated on 8-Mar-2024

Summary

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Gene symbol
VPS37A
Gene description
VPS37A subunit of ESCRT-I
See related
Ensembl:ENSCJAG00000011769
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 13
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 13 NC_071454.1 (21222599..21305858, complement)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 13 NC_048395.1 (21310902..21394140, complement)

Chromosome 13 - NC_071454.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 7 member 2 Neighboring gene potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 4-like Neighboring gene myotubularin related protein 7 Neighboring gene 40S ribosomal protein S27-like Neighboring gene CCR4-NOT transcription complex subunit 7 Neighboring gene zinc finger DHHC-type palmitoyltransferase 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in protein targeting to membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein targeting to vacuole IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of ESCRT I complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
vacuolar protein sorting-associated protein 37A
Names
VPS37A, ESCRT-I subunit

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071454.1 Reference mCalJa1.2.pat.X

    Range
    21222599..21305858 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003734583.5 → XP_003734631.1  vacuolar protein sorting-associated protein 37A isoform X1

    See identical proteins and their annotated locations for XP_003734631.1

    UniProtKB/TrEMBL
    F6RW56, U3CKF9
    Conserved Domains (1) summary
    pfam07200
    Location:235 → 380
    Mod_r; Modifier of rudimentary (Mod(r)) protein

  2. XM_035270204.2 → XP_035126095.1  vacuolar protein sorting-associated protein 37A isoform X1

    UniProtKB/TrEMBL
    F6RW56, U3CKF9
    Conserved Domains (1) summary
    pfam07200
    Location:235 → 380
    Mod_r; Modifier of rudimentary (Mod(r)) protein

  3. XM_008979232.3 → XP_008977480.1  vacuolar protein sorting-associated protein 37A isoform X1

    See identical proteins and their annotated locations for XP_008977480.1

    UniProtKB/TrEMBL
    F6RW56, U3CKF9
    Related
    ENSCJAP00000021640.2
    Conserved Domains (1) summary
    pfam07200
    Location:235 → 380
    Mod_r; Modifier of rudimentary (Mod(r)) protein

  4. XM_017963737.3 → XP_017819226.1  vacuolar protein sorting-associated protein 37A isoform X2

    UniProtKB/TrEMBL
    F6RW56
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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