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COPG2 COPI coat complex subunit gamma 2 [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100414060, updated on 3-Apr-2024

Summary

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Gene symbol
COPG2
Gene description
COPI coat complex subunit gamma 2
See related
Ensembl:ENSCJAG00000016441
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 8
Exon count:
26
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 8 NC_071449.1 (113844733..113996143)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 8 NC_048390.1 (114653666..114804301)

Chromosome 8 - NC_071449.1Genomic Context describing neighboring genes Neighboring gene pleiotrophin-like Neighboring gene KLF transcription factor 14 Neighboring gene testis specific 13 Neighboring gene glutamyl-tRNA amidotransferase subunit C Neighboring gene uncharacterized LOC118143873 Neighboring gene mesoderm specific transcript Neighboring gene centrosomal protein 41

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables structural molecule activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intra-Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in organelle transport along microtubule IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein secretion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of COPI vesicle coat IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum-Golgi intermediate compartment IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
coatomer subunit gamma-2
Names
coatomer protein complex subunit gamma 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071449.1 Reference mCalJa1.2.pat.X

    Range
    113844733..113996143
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054237697.1 → XP_054093672.1  coatomer subunit gamma-2 isoform X1

  2. XM_009003063.4 → XP_009001311.1  coatomer subunit gamma-2 isoform X2

    See identical proteins and their annotated locations for XP_009001311.1

    UniProtKB/TrEMBL
    U3B9F3, U3CBT2
    Related
    ENSCJAP00000019983.2
    Conserved Domains (2) summary
    sd00044
    Location:398 → 423
    HEAT; HEAT repeat [structural motif]
    cl26699
    Location:7 → 866
    COP-gamma_platf; Coatomer gamma subunit appendage platform subdomain

  3. XM_054237698.1 → XP_054093673.1  coatomer subunit gamma-2 isoform X3

  4. XM_035254714.2 → XP_035110605.1  coatomer subunit gamma-2 isoform X4

    UniProtKB/TrEMBL
    A0A5F4WAX7
    Conserved Domains (2) summary
    COG5240
    Location:1 → 709
    SEC21; Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
    sd00044
    Location:233 → 258
    HEAT; HEAT repeat [structural motif]
Nucleotide Protein
Heading Accession and Version

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