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SLC2A13 solute carrier family 2 member 13 [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100413096, updated on 8-Mar-2024

Summary

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Gene symbol
SLC2A13
Gene description
solute carrier family 2 member 13
See related
Ensembl:ENSCJAG00000017922
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 9
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 9 NC_071450.1 (32055138..32440775)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 9 NC_048391.1 (33202047..33587807)

Chromosome 9 - NC_071450.1Genomic Context describing neighboring genes Neighboring gene mucin 19, oligomeric Neighboring gene leucine rich repeat kinase 2 Neighboring gene 60S ribosomal protein L30-like Neighboring gene small nucleolar RNA SNORA22 Neighboring gene regulator of DNA class I crossover intermediates 1 Neighboring gene 60S ribosomal protein L7a-like Neighboring gene ATP binding cassette subfamily D member 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables myo-inositol:proton symporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
proton myo-inositol cotransporter

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071450.1 Reference mCalJa1.2.pat.X

    Range
    32055138..32440775
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017975993.4 → XP_017831482.1  proton myo-inositol cotransporter isoform X3

  2. XM_009003636.4 → XP_009001884.1  proton myo-inositol cotransporter isoform X1

    UniProtKB/TrEMBL
    F6TI38, U3DDC1
    Conserved Domains (2) summary
    cd06174
    Location:87 → 261
    MFS; The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of ...
    pfam00083
    Location:85 → 671
    Sugar_tr; Sugar (and other) transporter

  3. XM_002752368.5 → XP_002752414.1  proton myo-inositol cotransporter isoform X2

    See identical proteins and their annotated locations for XP_002752414.1

    UniProtKB/TrEMBL
    A0A8J8YSG2, F6TI38, U3DDC1
    Related
    ENSCJAP00000033091.2
    Conserved Domains (1) summary
    pfam00083
    Location:85 → 610
    Sugar_tr; Sugar (and other) transporter
Nucleotide Protein
Heading Accession and Version

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