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PRPF40A pre-mRNA processing factor 40 homolog A [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100412480, updated on 8-Mar-2024

Summary

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Gene symbol
PRPF40A
Gene description
pre-mRNA processing factor 40 homolog A
See related
Ensembl:ENSCJAG00000015541
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 6
Exon count:
26
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 6 NC_071447.1 (74116031..74173003)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 6 NC_048388.1 (75092855..75149856)

Chromosome 6 - NC_071447.1Genomic Context describing neighboring genes Neighboring gene E3 ubiquitin-protein ligase makorin-1-like Neighboring gene dnaJ homolog subfamily A member 1-like Neighboring gene ADP ribosylation factor like GTPase 6 interacting protein 6 Neighboring gene formin like 2 Neighboring gene 60S ribosomal protein L22-like Neighboring gene non-POU domain-containing octamer-binding protein-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA cis splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of U1 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U2-type prespliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pre-mRNA-processing factor 40 homolog A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071447.1 Reference mCalJa1.2.pat.X

    Range
    74116031..74173003
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008998882.4 → XP_008997130.2  pre-mRNA-processing factor 40 homolog A isoform X1

    UniProtKB/TrEMBL
    U3D8H3

  2. XM_008998883.4 → XP_008997131.2  pre-mRNA-processing factor 40 homolog A isoform X2

    UniProtKB/TrEMBL
    U3DIK6
    Related
    ENSCJAP00000028766.2

  3. XM_035304878.2 → XP_035160769.1  pre-mRNA-processing factor 40 homolog A isoform X3

    UniProtKB/TrEMBL
    U3D8H3
    Conserved Domains (1) summary
    COG5104
    Location:216 → 861
    PRP40; Splicing factor [RNA processing and modification]

  4. XM_035304879.2 → XP_035160770.1  pre-mRNA-processing factor 40 homolog A isoform X4

    UniProtKB/TrEMBL
    U3DIK6
    Conserved Domains (1) summary
    COG5104
    Location:216 → 857
    PRP40; Splicing factor [RNA processing and modification]

  5. XM_008998880.4 → XP_008997128.1  pre-mRNA-processing factor 40 homolog A isoform X5

    UniProtKB/TrEMBL
    U3D8H3
    Conserved Domains (4) summary
    smart00441
    Location:785 → 839
    FF; Contains two conserved F residues
    COG5104
    Location:174 → 837
    PRP40; Splicing factor [RNA processing and modification]
    cd00201
    Location:183 → 210
    WW; Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other ...
    pfam01846
    Location:432 → 481
    FF; FF domain

  6. XM_002749436.6 → XP_002749482.1  pre-mRNA-processing factor 40 homolog A isoform X6

    UniProtKB/TrEMBL
    U3DIK6
    Related
    ENSCJAP00000045739.1
    Conserved Domains (4) summary
    smart00441
    Location:781 → 835
    FF; Contains two conserved F residues
    COG5104
    Location:174 → 833
    PRP40; Splicing factor [RNA processing and modification]
    cd00201
    Location:183 → 210
    WW; Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other ...
    pfam01846
    Location:432 → 481
    FF; FF domain

  7. XM_035304880.2 → XP_035160771.1  pre-mRNA-processing factor 40 homolog A isoform X7

    UniProtKB/TrEMBL
    U3D8H3
    Conserved Domains (1) summary
    COG5104
    Location:174 → 819
    PRP40; Splicing factor [RNA processing and modification]

  8. XM_035304881.2 → XP_035160772.1  pre-mRNA-processing factor 40 homolog A isoform X8

    UniProtKB/TrEMBL
    U3DIK6
    Conserved Domains (1) summary
    COG5104
    Location:174 → 815
    PRP40; Splicing factor [RNA processing and modification]
Nucleotide Protein
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