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SEPTIN9 septin 9 [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100412361, updated on 3-Apr-2024

Summary

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Gene symbol
SEPTIN9
Gene description
septin 9
See related
Ensembl:ENSCJAG00000013203
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Also known as
SEPT9
Orthologs
human mouse all
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Genomic context

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See SEPTIN9 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
22
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 5 NC_071446.1 (129198731..129412616)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 5 NC_048387.1 (131911140..132125242)

Chromosome 5 - NC_071446.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103793393 Neighboring gene small Cajal body-specific RNA 16 Neighboring gene U4 spliceosomal RNA Neighboring gene SEC14 like lipid binding 1 Neighboring gene heterogeneous nuclear ribonucleoprotein A3-like Neighboring gene 60S ribosomal protein L32-like Neighboring gene uncharacterized LOC103793395 Neighboring gene collagen alpha-1(I) chain-like Neighboring gene uncharacterized LOC118153886 Neighboring gene barrier to autointegration factor 1 pseudogene Neighboring gene uncharacterized LOC118153887

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables molecular adaptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cytoskeleton-dependent cytokinesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell division site IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in microtubule cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of septin complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in septin ring IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
septin-9

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071446.1 Reference mCalJa1.2.pat.X

    Range
    129198731..129412616
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035301885.2 → XP_035157776.2  septin-9 isoform X1

    UniProtKB/TrEMBL
    F7EI46

  2. XM_008997808.4 → XP_008996056.3  septin-9 isoform X4

    UniProtKB/TrEMBL
    F7HJ38

  3. XM_008997807.5 → XP_008996055.3  septin-9 isoform X3

    UniProtKB/TrEMBL
    F7HJ35, U3DFD8, U3FL60

  4. XM_002748771.5 → XP_002748817.3  septin-9 isoform X2

    UniProtKB/TrEMBL
    F7GEF9, U3DUS4, U3EYG2

  5. XM_008997809.4 → XP_008996057.1  septin-9 isoform X5

    UniProtKB/TrEMBL
    F7HDU8
    Related
    ENSCJAP00000024331.1
    Conserved Domains (2) summary
    cd01850
    Location:131 → 405
    CDC_Septin; CDC/Septin GTPase family
    NF033761
    Location:3 → 109
    gliding_GltJ; adventurous gliding motility protein GltJ

  6. XM_035301887.2 → XP_035157778.1  septin-9 isoform X5

    UniProtKB/TrEMBL
    F7HDU8
    Conserved Domains (2) summary
    cd01850
    Location:131 → 405
    CDC_Septin; CDC/Septin GTPase family
    NF033761
    Location:3 → 109
    gliding_GltJ; adventurous gliding motility protein GltJ

  7. XM_035301888.2 → XP_035157779.1  septin-9 isoform X6

    UniProtKB/TrEMBL
    F7HDU8
    Conserved Domains (1) summary
    cd01850
    Location:112 → 386
    CDC_Septin; CDC/Septin GTPase family

  8. XM_008997813.4 → XP_008996061.1  septin-9 isoform X7

    See identical proteins and their annotated locations for XP_008996061.1

    UniProtKB/TrEMBL
    A0A8I3W584, F7HDU8
    Related
    ENSCJAP00000024289.2
    Conserved Domains (1) summary
    cd01850
    Location:44 → 318
    CDC_Septin; CDC/Septin GTPase family

  9. XM_035301889.2 → XP_035157780.1  septin-9 isoform X7

    UniProtKB/TrEMBL
    A0A8I3W584, F7HDU8
    Conserved Domains (1) summary
    cd01850
    Location:44 → 318
    CDC_Septin; CDC/Septin GTPase family

  10. XM_008997810.4 → XP_008996058.1  septin-9 isoform X7

    See identical proteins and their annotated locations for XP_008996058.1

    UniProtKB/TrEMBL
    A0A8I3W584, F7HDU8
    Related
    ENSCJAP00000004242.2
    Conserved Domains (1) summary
    cd01850
    Location:44 → 318
    CDC_Septin; CDC/Septin GTPase family

  11. XM_054256535.1 → XP_054112510.1  septin-9 isoform X7

    UniProtKB/TrEMBL
    A0A8I3W584

  12. XM_008997811.4 → XP_008996059.1  septin-9 isoform X7

    See identical proteins and their annotated locations for XP_008996059.1

    UniProtKB/TrEMBL
    A0A8I3W584, F7HDU8
    Conserved Domains (1) summary
    cd01850
    Location:44 → 318
    CDC_Septin; CDC/Septin GTPase family
Nucleotide Protein
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