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PIGT phosphatidylinositol glycan anchor biosynthesis class T [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100408743, updated on 8-Mar-2024

Summary

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Gene symbol
PIGT
Gene description
phosphatidylinositol glycan anchor biosynthesis class T
See related
Ensembl:ENSCJAG00000017414
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
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Genomic context

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See PIGT in Genome Data Viewer
Location:
chromosome: 5
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 5 NC_071446.1 (38769396..38779332)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 5 NC_048387.1 (38684709..38694676)

Chromosome 5 - NC_071446.1Genomic Context describing neighboring genes Neighboring gene SYS1 golgi trafficking protein Neighboring gene TP53 target 5 Neighboring gene uncharacterized LOC118153610 Neighboring gene dysbindin domain containing 2 Neighboring gene WAP four-disulfide core domain 2 Neighboring gene 40S ribosomal protein S7

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Development of the first marmoset-specific DNA microarray (EUMAMA): a new genetic tool for large-scale expression profiling in a non-human primate. Datson NA, et al. BMC Genomics, 2007 Jun 25. PMID 17592630, Free PMC Article
  2. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in attachment of GPI anchor to protein IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of GPI-anchor transamidase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
GPI transamidase component PIG-T
Names
GPI transamidase component PIG-T precursor-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071446.1 Reference mCalJa1.2.pat.X

    Range
    38769396..38779332
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002747589.6 → XP_002747635.3  GPI transamidase component PIG-T isoform X1

    UniProtKB/TrEMBL
    A0A8I4A013, U3FIU9
    Conserved Domains (1) summary
    pfam04113
    Location:46 → 565
    Gpi16; Gpi16 subunit, GPI transamidase component

  2. XM_008996006.4 → XP_008994254.2  GPI transamidase component PIG-T isoform X2

    UniProtKB/TrEMBL
    F7GDV4, U3EDS1
    Conserved Domains (1) summary
    pfam04113
    Location:46 → 498
    Gpi16; Gpi16 subunit, GPI transamidase component
Nucleotide Protein
Heading Accession and Version

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