RB1CC1 RB1 inducible coiled-coil 1 [Callithrix jacchus (white-tufted-ear marmoset)] - Gene

Summary

Gene symbol: RB1CC1
Gene description: RB1 inducible coiled-coil 1
See related: Ensembl:ENSCJAG00000014530
Gene type: protein coding
RefSeq status: MODEL
Organism: Callithrix jacchus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 16

Exon count:: 24

Annotation release	Status	Assembly	Chr	Location
RS_2023_03	current	mCalJa1.2.pat.X (GCF_011100555.1)	16	NC_071457.1 (1839569..1941624)
105	previous assembly	Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1)	16	NC_048398.1 (6730745..6832951, complement)

Chromosome 16 - NC_071457.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

RH25416 (e-PCR)
- UniSTS:79619

RH78347 (e-PCR)
- UniSTS:76864

WI-13801 (e-PCR)
- UniSTS:32585

RH12077 (e-PCR)
- UniSTS:66917

D8S1669 (e-PCR)
- UniSTS:74091

G20788 (e-PCR)
- UniSTS:7329

A006G21 (e-PCR)
- UniSTS:7330

Homology

NCBI Orthologs

Orthologs from OrthoDB

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables molecular adaptor activity	IEA Inferred from Electronic Annotation more info	PubMed
enables protein kinase binding	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in autophagosome assembly	IEA Inferred from Electronic Annotation more info	PubMed
involved_in autophagy of mitochondrion	IEA Inferred from Electronic Annotation more info	PubMed
involved_in autophagy of peroxisome	IEA Inferred from Electronic Annotation more info	PubMed
involved_in glycophagy	IEA Inferred from Electronic Annotation more info	PubMed
involved_in piecemeal microautophagy of the nucleus	IEA Inferred from Electronic Annotation more info	PubMed
involved_in positive regulation of protein phosphorylation	IEA Inferred from Electronic Annotation more info	PubMed
involved_in reticulophagy	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
part_of Atg1/ULK1 kinase complex	IEA Inferred from Electronic Annotation more info	PubMed
located_in extrinsic component of membrane	IEA Inferred from Electronic Annotation more info	PubMed
located_in phagophore assembly site membrane	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: RB1-inducible coiled-coil protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

NC_071457.1 Reference mCalJa1.2.pat.X

Range

1839569..1941624

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_002807622.5 → XP_002807668.2 RB1-inducible coiled-coil protein 1 isoform X1

UniProtKB/TrEMBL

U3BY99, U3EWG7

Conserved Domains (3) summary

COG0419
Location:843 → 1377

SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]

cd17060
Location:2 → 76

Ubl_RB1CC1; ubiquitin-like (Ubl) domain found in retinoblastoma 1-inducible coiled-coil protein 1 (RB1CC1) and similar proteins

pfam10377
Location:1439 → 1588

ATG11; Autophagy-related protein 11
XM_035276825.2 → XP_035132716.1 RB1-inducible coiled-coil protein 1 isoform X2

UniProtKB/TrEMBL

F7HUX1, U3DCZ2, U3FEA0

Conserved Domains (3) summary

COG0419
Location:843 → 1377

SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]

cd17060
Location:2 → 76

Ubl_RB1CC1; ubiquitin-like (Ubl) domain found in retinoblastoma 1-inducible coiled-coil protein 1 (RB1CC1) and similar proteins

pfam10377
Location:1439 → 1585

ATG11; Autophagy-related protein 11
XM_035276826.2 → XP_035132717.1 RB1-inducible coiled-coil protein 1 isoform X3

UniProtKB/TrEMBL

U3EWG7

Conserved Domains (3) summary

COG0419
Location:843 → 1366

SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]

cd17060
Location:2 → 76

Ubl_RB1CC1; ubiquitin-like (Ubl) domain found in retinoblastoma 1-inducible coiled-coil protein 1 (RB1CC1) and similar proteins

pfam10377
Location:1432 → 1581

ATG11; Autophagy-related protein 11
XM_035276827.2 → XP_035132718.1 RB1-inducible coiled-coil protein 1 isoform X4

UniProtKB/TrEMBL

U3DCZ2

Conserved Domains (3) summary

COG0419
Location:843 → 1366

SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]

cd17060
Location:2 → 76

Ubl_RB1CC1; ubiquitin-like (Ubl) domain found in retinoblastoma 1-inducible coiled-coil protein 1 (RB1CC1) and similar proteins

pfam10377
Location:1432 → 1578

ATG11; Autophagy-related protein 11
XM_035276828.2 → XP_035132719.1 RB1-inducible coiled-coil protein 1 isoform X5

UniProtKB/TrEMBL

U3EWG7

Conserved Domains (2) summary

COG0419
Location:782 → 1316

SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]

pfam10377
Location:1378 → 1527

ATG11; Autophagy-related protein 11