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ERCC2 ERCC excision repair 2, TFIIH core complex helicase subunit [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100407061, updated on 3-Apr-2024

Summary

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Gene symbol
ERCC2
Gene description
ERCC excision repair 2, TFIIH core complex helicase subunit
See related
Ensembl:ENSCJAG00000012716
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 22
Exon count:
25
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 22 NC_071463.1 (38111716..38132442, complement)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 22 NC_048404.1 (39427101..39447734, complement)

Chromosome 22 - NC_071463.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC128930455 Neighboring gene creatine kinase, M-type Neighboring gene microtubule-associated protein RP/EB family member 1-like Neighboring gene kinesin light chain 3 Neighboring gene protein phosphatase 1 regulatory subunit 13 like Neighboring gene RNA polymerase I subunit G Neighboring gene ERCC excision repair 1, endonuclease non-catalytic subunit

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables damaged DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nucleotide-excision repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nucleotide-excision repair, DNA duplex unwinding IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of mitotic recombination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
general transcription and DNA repair factor IIH helicase subunit XPD
Names
TFIIH basal transcription factor complex helicase XPD subunit
excision repair cross-complementing rodent repair deficiency, complementation group 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071463.1 Reference mCalJa1.2.pat.X

    Range
    38111716..38132442 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035283573.2 → XP_035139464.2  general transcription and DNA repair factor IIH helicase subunit XPD isoform X3

  2. XM_002762238.5 → XP_002762284.3  general transcription and DNA repair factor IIH helicase subunit XPD isoform X1

    UniProtKB/TrEMBL
    U3FJ04

  3. XM_035283571.2 → XP_035139462.2  general transcription and DNA repair factor IIH helicase subunit XPD isoform X2

  4. XM_035283572.2 → XP_035139463.2  general transcription and DNA repair factor IIH helicase subunit XPD isoform X2

  5. XM_035283575.2 → XP_035139466.2  general transcription and DNA repair factor IIH helicase subunit XPD isoform X4

RNA

  1. XR_616190.4 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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