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IFT122 intraflagellar transport 122 [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100406158, updated on 3-Apr-2024

Summary

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Gene symbol
IFT122
Gene description
intraflagellar transport 122
See related
Ensembl:ENSCJAG00000017213
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
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Genomic context

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See IFT122 in Genome Data Viewer
Location:
chromosome: 15
Exon count:
32
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 15 NC_071456.1 (66569417..66649065, complement)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 15 NC_048397.1 (67112946..67193669, complement)

Chromosome 15 - NC_071456.1Genomic Context describing neighboring genes Neighboring gene histone H1.8-like Neighboring gene rhodopsin Neighboring gene methyl-CpG binding domain 4, DNA glycosylase Neighboring gene EF-hand calcium binding domain 12

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intraciliary retrograde transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in non-motile cilium assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein localization to cilium IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of intraciliary transport particle A IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in non-motile cilium IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
intraflagellar transport protein 122 homolog
Names
intraflagellar transport 122 homolog
intraflagellar transport protein 122 homolog pseudogene

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071456.1 Reference mCalJa1.2.pat.X

    Range
    66569417..66649065 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035273810.2 → XP_035129701.1  intraflagellar transport protein 122 homolog isoform X8

    UniProtKB/TrEMBL
    A0A8I3WBV4
    Conserved Domains (4) summary
    COG2319
    Location:7 → 80
    WD40; WD40 repeat [General function prediction only]
    TIGR02917
    Location:604 → 799
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00039
    Location:15 → 51
    7WD40; WD40 repeat [structural motif]
    cl29593
    Location:49 → 291
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  2. XM_035273807.2 → XP_035129698.1  intraflagellar transport protein 122 homolog isoform X5

    UniProtKB/TrEMBL
    A0A8I3WBV4, U3DH60
    Conserved Domains (4) summary
    COG2319
    Location:7 → 80
    WD40; WD40 repeat [General function prediction only]
    TIGR02917
    Location:564 → 846
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00039
    Location:15 → 51
    7WD40; WD40 repeat [structural motif]
    cl29593
    Location:49 → 291
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  3. XM_035273806.2 → XP_035129697.1  intraflagellar transport protein 122 homolog isoform X4

    UniProtKB/TrEMBL
    A0A8I3WBV4, U3D2S9
    Conserved Domains (4) summary
    COG2319
    Location:7 → 80
    WD40; WD40 repeat [General function prediction only]
    TIGR02917
    Location:564 → 894
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00039
    Location:15 → 51
    7WD40; WD40 repeat [structural motif]
    cl29593
    Location:49 → 291
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  4. XM_054245980.1 → XP_054101955.1  intraflagellar transport protein 122 homolog isoform X3

    UniProtKB/TrEMBL
    A0A8I3XAJ4

  5. XM_035273801.2 → XP_035129692.1  intraflagellar transport protein 122 homolog isoform X2

    UniProtKB/TrEMBL
    A0A8I3WBV4, U3C1Q3
    Conserved Domains (3) summary
    TIGR02917
    Location:618 → 900
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00039
    Location:15 → 51
    7WD40; WD40 repeat [structural motif]
    cl29593
    Location:12 → 190
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  6. XM_035273818.2 → XP_035129709.1  intraflagellar transport protein 122 homolog isoform X11

    Conserved Domains (3) summary
    TIGR02917
    Location:618 → 948
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00039
    Location:15 → 51
    7WD40; WD40 repeat [structural motif]
    cl29593
    Location:12 → 190
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  7. XM_035273808.2 → XP_035129699.1  intraflagellar transport protein 122 homolog isoform X6

    UniProtKB/TrEMBL
    A0A8I3WBV4
    Conserved Domains (3) summary
    TIGR02917
    Location:618 → 948
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00039
    Location:15 → 51
    7WD40; WD40 repeat [structural motif]
    cl29593
    Location:12 → 190
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  8. XM_035273800.2 → XP_035129691.1  intraflagellar transport protein 122 homolog isoform X1

    UniProtKB/TrEMBL
    A0A8I3WBV4, A0A8I3X2D0
    Conserved Domains (3) summary
    TIGR02917
    Location:618 → 948
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00039
    Location:15 → 51
    7WD40; WD40 repeat [structural motif]
    cl29593
    Location:12 → 190
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  9. XM_054245981.1 → XP_054101956.1  intraflagellar transport protein 122 homolog isoform X7

  10. XM_054245982.1 → XP_054101957.1  intraflagellar transport protein 122 homolog isoform X9

  11. XM_054245983.1 → XP_054101958.1  intraflagellar transport protein 122 homolog isoform X11

  12. XM_035273814.2 → XP_035129705.1  intraflagellar transport protein 122 homolog isoform X10

    UniProtKB/TrEMBL
    F7HLD1
    Conserved Domains (3) summary
    TIGR02917
    Location:618 → 948
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00039
    Location:15 → 51
    7WD40; WD40 repeat [structural motif]
    cl29593
    Location:12 → 190
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
Nucleotide Protein
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