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HBS1L HBS1 like translational GTPase [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100404628, updated on 3-Apr-2024

Summary

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Gene symbol
HBS1L
Gene description
HBS1 like translational GTPase
See related
Ensembl:ENSCJAG00000007678
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 4
Exon count:
19
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 4 NC_071445.1 (137757607..137847588, complement)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 4 NC_048386.1 (138341469..138431520, complement)

Chromosome 4 - NC_071445.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC128931681 Neighboring gene aldehyde dehydrogenase 8 family member A1 Neighboring gene U6 spliceosomal RNA Neighboring gene ATP-dependent Clp protease proteolytic subunit, mitochondrial-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in translation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
HBS1-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071445.1 Reference mCalJa1.2.pat.X

    Range
    137757607..137847588 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002747054.5 → XP_002747100.1  HBS1-like protein isoform X1

    See identical proteins and their annotated locations for XP_002747100.1

    UniProtKB/TrEMBL
    F7HXM1, U3F145
    Related
    ENSCJAP00000014443.1
    Conserved Domains (2) summary
    COG5256
    Location:257 → 685
    TEF1; Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
    pfam08938
    Location:54 → 129
    HBS1_N; HBS1 N-terminus

  2. XM_054254457.1 → XP_054110432.1  HBS1-like protein isoform X3

    UniProtKB/TrEMBL
    A0A8I3WJ59

  3. XM_008995110.4 → XP_008993358.1  HBS1-like protein isoform X2

    UniProtKB/TrEMBL
    A0A5F4VQZ5
    Related
    ENSCJAP00000047740.1
    Conserved Domains (1) summary
    pfam08938
    Location:54 → 124
    HBS1_N; HBS1 N-terminus
Nucleotide Protein
Heading Accession and Version

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