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CDC5L cell division cycle 5 like [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100404504, updated on 8-Mar-2024

Summary

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Gene symbol
CDC5L
Gene description
cell division cycle 5 like
See related
Ensembl:ENSCJAG00000012210
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 4
Exon count:
16
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 4 NC_071445.1 (48968335..49027544)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 4 NC_048386.1 (49528557..49587766)

Chromosome 4 - NC_071445.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC118152868 Neighboring gene serine/threonine-protein kinase MAK-like Neighboring gene 40S ribosomal protein S24-like Neighboring gene alanyl-tRNA synthetase 2, mitochondrial Neighboring gene spermatogenesis associated serine rich 1 Neighboring gene SPT3 homolog, SAGA and STAGA complex component Neighboring gene 60S ribosomal protein L22-like Neighboring gene RUNX family transcription factor 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Prp19 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cell division cycle 5-like protein
Names
CDC5 cell division cycle 5-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071445.1 Reference mCalJa1.2.pat.X

    Range
    48968335..49027544
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002746594.6 → XP_002746640.1  cell division cycle 5-like protein

    See identical proteins and their annotated locations for XP_002746640.1

    UniProtKB/TrEMBL
    F7ISF5, U3F3N0
    Related
    ENSCJAP00000022454.1
    Conserved Domains (3) summary
    COG5147
    Location:6 → 303
    REB1; Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
    pfam11831
    Location:404 → 655
    Myb_Cef; pre-mRNA splicing factor component
    cl25732
    Location:626 → 802
    SMC_N; RecF/RecN/SMC N terminal domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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