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UBTF upstream binding transcription factor [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100402944, updated on 8-Mar-2024

Summary

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Gene symbol
UBTF
Gene description
upstream binding transcription factor
See related
Ensembl:ENSCJAG00000010066
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
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Genomic context

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See UBTF in Genome Data Viewer
Location:
chromosome: 5
Exon count:
24
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 5 NC_071446.1 (67185113..67199758, complement)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 5 NC_048387.1 (69801761..69819793, complement)

Chromosome 5 - NC_071446.1Genomic Context describing neighboring genes Neighboring gene transmembrane and ubiquitin like domain containing 2 Neighboring gene ataxin 7 like 3 Neighboring gene solute carrier family 4 member 1 (Diego blood group) Neighboring gene small nucleolar RNA U3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
nucleolar transcription factor 1
Names
upstream binding transcription factor, RNA polymerase I

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071446.1 Reference mCalJa1.2.pat.X

    Range
    67185113..67199758 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035303041.2 → XP_035158932.1  nucleolar transcription factor 1 isoform X1

    UniProtKB/TrEMBL
    U3DN24, U3FAY1
    Conserved Domains (3) summary
    cd01390
    Location:407 → 470
    HMGB-UBF_HMG-box; class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal ...
    pfam14887
    Location:479 → 562
    HMG_box_5; HMG (high mobility group) box 5
    pfam00505
    Location:112 → 179
    HMG_box; HMG (high mobility group) box

  2. XM_035303045.2 → XP_035158936.1  nucleolar transcription factor 1 isoform X1

    UniProtKB/TrEMBL
    U3DN24, U3FAY1
    Conserved Domains (3) summary
    cd01390
    Location:407 → 470
    HMGB-UBF_HMG-box; class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal ...
    pfam14887
    Location:479 → 562
    HMG_box_5; HMG (high mobility group) box 5
    pfam00505
    Location:112 → 179
    HMG_box; HMG (high mobility group) box

  3. XM_035303046.2 → XP_035158937.1  nucleolar transcription factor 1 isoform X2

    UniProtKB/TrEMBL
    F7H0V6, U3CL59, U3F7Z0
    Conserved Domains (3) summary
    cd01390
    Location:370 → 433
    HMGB-UBF_HMG-box; class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal ...
    pfam14887
    Location:442 → 525
    HMG_box_5; HMG (high mobility group) box 5
    pfam00505
    Location:112 → 179
    HMG_box; HMG (high mobility group) box

  4. XM_035303042.2 → XP_035158933.1  nucleolar transcription factor 1 isoform X1

    UniProtKB/TrEMBL
    U3DN24, U3FAY1
    Conserved Domains (3) summary
    cd01390
    Location:407 → 470
    HMGB-UBF_HMG-box; class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal ...
    pfam14887
    Location:479 → 562
    HMG_box_5; HMG (high mobility group) box 5
    pfam00505
    Location:112 → 179
    HMG_box; HMG (high mobility group) box

  5. XM_035303043.2 → XP_035158934.1  nucleolar transcription factor 1 isoform X1

    UniProtKB/TrEMBL
    U3DN24, U3FAY1
    Conserved Domains (3) summary
    cd01390
    Location:407 → 470
    HMGB-UBF_HMG-box; class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal ...
    pfam14887
    Location:479 → 562
    HMG_box_5; HMG (high mobility group) box 5
    pfam00505
    Location:112 → 179
    HMG_box; HMG (high mobility group) box

  6. XM_035303044.2 → XP_035158935.1  nucleolar transcription factor 1 isoform X1

    UniProtKB/TrEMBL
    U3DN24, U3FAY1
    Conserved Domains (3) summary
    cd01390
    Location:407 → 470
    HMGB-UBF_HMG-box; class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal ...
    pfam14887
    Location:479 → 562
    HMG_box_5; HMG (high mobility group) box 5
    pfam00505
    Location:112 → 179
    HMG_box; HMG (high mobility group) box
Nucleotide Protein
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