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LARP4 La ribonucleoprotein 4 [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100401898, updated on 3-Apr-2024

Summary

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Gene symbol
LARP4
Gene description
La ribonucleoprotein 4
See related
Ensembl:ENSCJAG00000021131
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
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Genomic context

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See LARP4 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
27
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 9 NC_071450.1 (65530186..65730853, complement)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 9 NC_048391.1 (66651186..66851705, complement)

Chromosome 9 - NC_071450.1Genomic Context describing neighboring genes Neighboring gene disco interacting protein 2 homolog B Neighboring gene protein LSM14 homolog A-like Neighboring gene uncharacterized LOC118144249 Neighboring gene 40S ribosomal protein S15a-like Neighboring gene family with sequence similarity 186 member A Neighboring gene 60S ribosomal protein L11-like Neighboring gene NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 1 Neighboring gene U6 spliceosomal RNA Neighboring gene LIM domain and actin binding 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA 3'-UTR binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasmic stress granule IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
la-related protein 4
Names
La ribonucleoprotein domain family member 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071450.1 Reference mCalJa1.2.pat.X

    Range
    65530186..65730853 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035256812.2 → XP_035112703.2  la-related protein 4 isoform X6

  2. XM_035256807.2 → XP_035112698.2  la-related protein 4 isoform X5

  3. XM_035256817.2 → XP_035112708.2  la-related protein 4 isoform X13

  4. XM_035256809.2 → XP_035112700.2  la-related protein 4 isoform X5

  5. XM_035256808.2 → XP_035112699.2  la-related protein 4 isoform X5

  6. XM_035256811.2 → XP_035112702.2  la-related protein 4 isoform X5

  7. XM_002752450.5 → XP_002752496.2  la-related protein 4 isoform X3

    UniProtKB/TrEMBL
    U3E3A9

  8. XM_009003773.3 → XP_009002021.2  la-related protein 4 isoform X4

    UniProtKB/TrEMBL
    U3D2X7

  9. XM_009003774.3 → XP_009002022.2  la-related protein 4 isoform X7

  10. XM_035256824.2 → XP_035112715.2  la-related protein 4 isoform X15

  11. XM_054239203.1 → XP_054095178.1  la-related protein 4 isoform X11

  12. XM_054239202.1 → XP_054095177.1  la-related protein 4 isoform X10

  13. XM_035256813.2 → XP_035112704.2  la-related protein 4 isoform X9

  14. XM_009003776.3 → XP_009002024.2  la-related protein 4 isoform X14

    UniProtKB/TrEMBL
    U3DK11

  15. XM_054239204.1 → XP_054095179.1  la-related protein 4 isoform X12

  16. XM_054239200.1 → XP_054095175.1  la-related protein 4 isoform X2

  17. XM_054239198.1 → XP_054095173.1  la-related protein 4 isoform X1

  18. XM_009003775.3 → XP_009002023.2  la-related protein 4 isoform X13

  19. XM_054239201.1 → XP_054095176.1  la-related protein 4 isoform X8

  20. XM_035256826.2 → XP_035112717.2  la-related protein 4 isoform X13

  21. XM_035256822.2 → XP_035112713.2  la-related protein 4 isoform X13

  22. XM_054239205.1 → XP_054095180.1  la-related protein 4 isoform X13

  23. XM_054239206.1 → XP_054095181.1  la-related protein 4 isoform X13

Nucleotide Protein
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