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SBSPON somatomedin B and thrombospondin type 1 domain containing [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100401572, updated on 8-Mar-2024

Summary

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Gene symbol
SBSPON
Gene description
somatomedin B and thrombospondin type 1 domain containing
See related
Ensembl:ENSCJAG00000007701
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 16
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 16 NC_071457.1 (26948818..26976647, complement)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 16 NC_048398.1 (27067949..27095786, complement)

Chromosome 16 - NC_071457.1Genomic Context describing neighboring genes Neighboring gene potassium voltage-gated channel subfamily B member 2 Neighboring gene HAUS augmin-like complex subunit 1 Neighboring gene U6 spliceosomal RNA Neighboring gene telomeric repeat binding factor 1 Neighboring gene putative elongation factor 1-alpha-like 3 Neighboring gene heterogeneous nuclear ribonucleoprotein H3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
somatomedin-B and thrombospondin type-1 domain-containing protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071457.1 Reference mCalJa1.2.pat.X

    Range
    26948818..26976647 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003734959.6 → XP_003735007.3  somatomedin-B and thrombospondin type-1 domain-containing protein isoform X2

    UniProtKB/TrEMBL
    F7ITB4, U3BET2
    Conserved Domains (1) summary
    pfam19028
    Location:75 → 121
    TSP1_spondin; Spondin-like TSP1 domain

  2. XM_008982770.4 → XP_008981018.2  somatomedin-B and thrombospondin type-1 domain-containing protein isoform X1

    UniProtKB/TrEMBL
    F7ITB4
    Conserved Domains (1) summary
    pfam19028
    Location:75 → 121
    TSP1_spondin; Spondin-like TSP1 domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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