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ZFP1 ZFP1 zinc finger protein [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100401214, updated on 8-Mar-2024

Summary

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Gene symbol
ZFP1
Gene description
ZFP1 zinc finger protein
See related
Ensembl:ENSCJAG00000014349
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 20
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 20 NC_071461.1 (29154978..29179019)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 20 NC_048402.1 (30151885..30175944)

Chromosome 20 - NC_071461.1Genomic Context describing neighboring genes Neighboring gene zinc and ring finger 1 Neighboring gene dnaJ homolog subfamily A member 1-like Neighboring gene lactate dehydrogenase D Neighboring gene chymotrypsinogen B2 Neighboring gene chymotrypsinogen B1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein 1 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071461.1 Reference mCalJa1.2.pat.X

    Range
    29154978..29179019
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008986211.4 → XP_008984459.1  zinc finger protein 1 homolog isoform X1

    See identical proteins and their annotated locations for XP_008984459.1

    UniProtKB/TrEMBL
    F7I4P3
    Related
    ENSCJAP00000026395.2
    Conserved Domains (4) summary
    COG5048
    Location:266 → 403
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:326 → 346
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:7 → 47
    KRAB; KRAB box
    pfam13465
    Location:226 → 251
    zf-H2C2_2; Zinc-finger double domain

  2. XM_035281798.2 → XP_035137689.1  zinc finger protein 1 homolog isoform X2

    Conserved Domains (3) summary
    COG5048
    Location:211 → 348
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:271 → 291
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:171 → 196
    zf-H2C2_2; Zinc-finger double domain

  3. XM_035281799.2 → XP_035137690.1  zinc finger protein 1 homolog isoform X2

    Conserved Domains (3) summary
    COG5048
    Location:211 → 348
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:271 → 291
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:171 → 196
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
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