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TSPYL2 TSPY like 2 [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100400997, updated on 8-Mar-2024

Summary

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Gene symbol
TSPYL2
Gene description
TSPY like 2
See related
Ensembl:ENSCJAG00000005850
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: X
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) X NC_071464.1 (51666776..51672928)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) X NC_048405.1 (51555416..51561568)

Chromosome X - NC_071464.1Genomic Context describing neighboring genes Neighboring gene family with sequence similarity 156 member A Neighboring gene G protein-coupled receptor 173 Neighboring gene uncharacterized LOC103790240 Neighboring gene U7 small nuclear RNA Neighboring gene actin, cytoplasmic 2-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chromatin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nucleosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of chromatin IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
testis-specific Y-encoded-like protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071464.1 Reference mCalJa1.2.pat.X

    Range
    51666776..51672928
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035288238.2 → XP_035144129.1  testis-specific Y-encoded-like protein 2 isoform X1

    UniProtKB/TrEMBL
    F7IFH4, U3BTI2, W4VSC1
    Conserved Domains (1) summary
    cl08298
    Location:231 → 400
    NAP; Nucleosome assembly protein (NAP)

  2. XM_035288239.2 → XP_035144130.1  testis-specific Y-encoded-like protein 2 isoform X2

    UniProtKB/TrEMBL
    U3BTI2
    Conserved Domains (2) summary
    NF000535
    Location:400 → 592
    MSCRAMM_SdrC; MSCRAMM family adhesin SdrC
    cl08298
    Location:231 → 400
    NAP; Nucleosome assembly protein (NAP)
Nucleotide Protein
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