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OTULIN OTU deubiquitinase with linear linkage specificity [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100400719, updated on 8-Mar-2024

Summary

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Gene symbol
OTULIN
Gene description
OTU deubiquitinase with linear linkage specificity
See related
Ensembl:ENSCJAG00000010884
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Also known as
FAM105B
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 2
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 2 NC_071443.1 (187270528..187320874, complement)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 2 NC_048384.1 (188859299..188896124, complement)

Chromosome 2 - NC_071443.1Genomic Context describing neighboring genes Neighboring gene selenide, water dikinase 2-like Neighboring gene uncharacterized LOC108590699 Neighboring gene ANKH inorganic pyrophosphate transport regulator Neighboring gene tubulin alpha chain-like Neighboring gene T-complex protein 1 subunit zeta-like Neighboring gene U6 snRNA-associated Sm-like protein LSm3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cysteine-type deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein linear deubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ubiquitin thioesterase otulin
Names
family with sequence similarity 105, member B
protein FAM105B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071443.1 Reference mCalJa1.2.pat.X

    Range
    187270528..187320874 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002745106.5 → XP_002745152.1  ubiquitin thioesterase otulin isoform X2

    See identical proteins and their annotated locations for XP_002745152.1

    UniProtKB/TrEMBL
    F7HHP4, U3AV46
    Related
    ENSCJAP00000020069.1
    Conserved Domains (1) summary
    pfam16218
    Location:81 → 344
    Peptidase_C101; Peptidase family C101

  2. XM_017969984.4 → XP_017825473.1  ubiquitin thioesterase otulin isoform X1

    UniProtKB/TrEMBL
    A0A8J8Y147

  3. XM_054252323.1 → XP_054108298.1  ubiquitin thioesterase otulin isoform X3

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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