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PTBP2 polypyrimidine tract binding protein 2 [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100398253, updated on 8-Mar-2024

Summary

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Gene symbol
PTBP2
Gene description
polypyrimidine tract binding protein 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 7
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 7 NC_071448.1 (131899359..131988826)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 7 NC_048389.1 (133280919..133370535)

Chromosome 7 - NC_071448.1Genomic Context describing neighboring genes Neighboring gene NADH dehydrogenase [ubiquinone] iron-sulfur protein 5-like Neighboring gene DNA-directed RNA polymerases I and III subunit RPAC2-like Neighboring gene tubulin alpha chain-like Neighboring gene histone H2A.V-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of RNA splicing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polypyrimidine tract-binding protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071448.1 Reference mCalJa1.2.pat.X

    Range
    131899359..131988826
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035252228.2 → XP_035108119.1  polypyrimidine tract-binding protein 2 isoform X9

    UniProtKB/TrEMBL
    A0A5F4VYU5
    Conserved Domains (1) summary
    TIGR01649
    Location:65 → 545
    hnRNP-L_PTB; hnRNP-L/PTB/hephaestus splicing factor family

  2. XM_035252220.2 → XP_035108111.1  polypyrimidine tract-binding protein 2 isoform X4

    UniProtKB/TrEMBL
    A0A5F4VYU5, A0A5K1VQN8
    Conserved Domains (1) summary
    TIGR01649
    Location:57 → 537
    hnRNP-L_PTB; hnRNP-L/PTB/hephaestus splicing factor family

  3. XM_035252221.2 → XP_035108112.1  polypyrimidine tract-binding protein 2 isoform X5

    UniProtKB/TrEMBL
    A0A5F4VYU5, F6RWP2, U3CMT6, U3DUQ1
    Conserved Domains (1) summary
    TIGR01649
    Location:57 → 536
    hnRNP-L_PTB; hnRNP-L/PTB/hephaestus splicing factor family

  4. XM_035252222.2 → XP_035108113.1  polypyrimidine tract-binding protein 2 isoform X6

    UniProtKB/TrEMBL
    A0A5F4VYU5, U3D5A3
    Conserved Domains (1) summary
    TIGR01649
    Location:57 → 532
    hnRNP-L_PTB; hnRNP-L/PTB/hephaestus splicing factor family

  5. XM_035252224.2 → XP_035108115.1  polypyrimidine tract-binding protein 2 isoform X7

    UniProtKB/TrEMBL
    A0A5F4VYU5, U3E685
    Conserved Domains (1) summary
    TIGR01649
    Location:57 → 531
    hnRNP-L_PTB; hnRNP-L/PTB/hephaestus splicing factor family

  6. XM_035252218.2 → XP_035108109.1  polypyrimidine tract-binding protein 2 isoform X2

    UniProtKB/TrEMBL
    A0A5F4VYU5
    Conserved Domains (1) summary
    TIGR01649
    Location:65 → 540
    hnRNP-L_PTB; hnRNP-L/PTB/hephaestus splicing factor family

  7. XM_035252219.2 → XP_035108110.1  polypyrimidine tract-binding protein 2 isoform X3

    UniProtKB/TrEMBL
    A0A5F4VYU5
    Conserved Domains (1) summary
    TIGR01649
    Location:65 → 539
    hnRNP-L_PTB; hnRNP-L/PTB/hephaestus splicing factor family

  8. XM_035252217.2 → XP_035108108.1  polypyrimidine tract-binding protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A5F4VYU5
    Conserved Domains (1) summary
    TIGR01649
    Location:65 → 544
    hnRNP-L_PTB; hnRNP-L/PTB/hephaestus splicing factor family

  9. XM_035252225.2 → XP_035108116.1  polypyrimidine tract-binding protein 2 isoform X8

    UniProtKB/TrEMBL
    A0A5F4VYU5
    Conserved Domains (1) summary
    TIGR01649
    Location:26 → 506
    hnRNP-L_PTB; hnRNP-L/PTB/hephaestus splicing factor family
Nucleotide Protein
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