U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LYN LYN proto-oncogene, Src family tyrosine kinase [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100390096, updated on 11-Apr-2024

Summary

Go to the top of the page Help
Gene symbol
LYN
Gene description
LYN proto-oncogene, Src family tyrosine kinase
See related
Ensembl:ENSCJAG00000016635
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 16
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 16 NC_071457.1 (10654688..10785702)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 16 NC_048398.1 (10739194..10870106)

Chromosome 16 - NC_071457.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108588624 Neighboring gene uncharacterized LOC118148622 Neighboring gene uncharacterized LOC108588623 Neighboring gene small nucleolar RNA U54 Neighboring gene ribosomal protein S20 Neighboring gene MOS proto-oncogene, serine/threonine kinase

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables non-membrane spanning protein tyrosine kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables signaling receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell surface receptor protein tyrosine kinase signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in innate immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extrinsic component of cytoplasmic side of plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
tyrosine-protein kinase Lyn
Names
v-yes-1 Yamaguchi sarcoma viral related oncogene homolog

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071457.1 Reference mCalJa1.2.pat.X

    Range
    10654688..10785702
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002758913.5 → XP_002758959.1  tyrosine-protein kinase Lyn isoform X1

    See identical proteins and their annotated locations for XP_002758959.1

    UniProtKB/TrEMBL
    A0A8I3VYW5, U3DUJ3
    Related
    ENSCJAP00000030640.2
    Conserved Domains (3) summary
    cd10364
    Location:125 → 225
    SH2_Src_Lyn; Src homology 2 (SH2) domain found in Lyn
    cd12004
    Location:67 → 122
    SH3_Lyn; Src homology 3 domain of Lyn Protein Tyrosine Kinase
    cd05072
    Location:239 → 510
    PTKc_Lyn; Catalytic domain of the Protein Tyrosine Kinase, Lyn

  2. XM_008982662.4 → XP_008980910.1  tyrosine-protein kinase Lyn isoform X2

    See identical proteins and their annotated locations for XP_008980910.1

    UniProtKB/TrEMBL
    A0A8I3VYW5, F7B7A6, U3D0I6
    Conserved Domains (3) summary
    cd10364
    Location:104 → 204
    SH2_Src_Lyn; Src homology 2 (SH2) domain found in Lyn
    cd12004
    Location:46 → 101
    SH3_Lyn; Src homology 3 domain of Lyn Protein Tyrosine Kinase
    cd05072
    Location:218 → 489
    PTKc_Lyn; Catalytic domain of the Protein Tyrosine Kinase, Lyn
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.