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STRA6 signaling receptor and transporter of retinol STRA6 [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100389569, updated on 3-Apr-2024

Summary

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Gene symbol
STRA6
Gene description
signaling receptor and transporter of retinol STRA6
See related
Ensembl:ENSCJAG00000017863
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 10
Exon count:
24
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 10 NC_071451.1 (18499517..18535523, complement)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 10 NC_048392.1 (18715584..18751611, complement)

Chromosome 10 - NC_071451.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC128928746 Neighboring gene immunoglobulin superfamily containing leucine rich repeat Neighboring gene coiled-coil domain containing 33 Neighboring gene uncharacterized LOC128928749 Neighboring gene DNA-directed RNA polymerase II subunit RPB1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables retinol transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables signaling receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in vitamin A import into cell IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
receptor for retinol uptake STRA6
Names
stimulated by retinoic acid 6
stimulated by retinoic acid gene 6 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071451.1 Reference mCalJa1.2.pat.X

    Range
    18499517..18535523 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009005231.4 → XP_009003479.1  receptor for retinol uptake STRA6 isoform X1

    See identical proteins and their annotated locations for XP_009003479.1

    UniProtKB/TrEMBL
    F6PWC9
    Conserved Domains (1) summary
    pfam14752
    Location:41 → 699
    RBP_receptor; Retinol binding protein receptor

  2. XM_017976747.3 → XP_017832236.1  receptor for retinol uptake STRA6 isoform X1

    UniProtKB/TrEMBL
    F6PWC9
    Conserved Domains (1) summary
    pfam14752
    Location:41 → 699
    RBP_receptor; Retinol binding protein receptor

  3. XM_054239421.1 → XP_054095396.1  receptor for retinol uptake STRA6 isoform X2

    UniProtKB/TrEMBL
    A0A8I3WIP0

  4. XM_009005232.4 → XP_009003480.1  receptor for retinol uptake STRA6 isoform X1

    See identical proteins and their annotated locations for XP_009003480.1

    UniProtKB/TrEMBL
    F6PWC9
    Conserved Domains (1) summary
    pfam14752
    Location:41 → 699
    RBP_receptor; Retinol binding protein receptor

  5. XM_035259209.2 → XP_035115100.1  receptor for retinol uptake STRA6 isoform X2

    UniProtKB/TrEMBL
    A0A8I3WIP0, F6PWC9
    Conserved Domains (1) summary
    pfam14752
    Location:41 → 656
    RBP_receptor; Retinol binding protein receptor

  6. XM_035259211.2 → XP_035115102.1  receptor for retinol uptake STRA6 isoform X2

    UniProtKB/TrEMBL
    A0A8I3WIP0, F6PWC9
    Conserved Domains (1) summary
    pfam14752
    Location:41 → 656
    RBP_receptor; Retinol binding protein receptor

  7. XM_009005234.4 → XP_009003482.1  receptor for retinol uptake STRA6 isoform X1

    See identical proteins and their annotated locations for XP_009003482.1

    UniProtKB/TrEMBL
    F6PWC9
    Conserved Domains (1) summary
    pfam14752
    Location:41 → 699
    RBP_receptor; Retinol binding protein receptor

  8. XM_002753321.6 → XP_002753367.2  receptor for retinol uptake STRA6 isoform X4

    UniProtKB/TrEMBL
    F7BJF2, F7FVL0
    Related
    ENSCJAP00000032969.2
    Conserved Domains (1) summary
    pfam14752
    Location:80 → 695
    RBP_receptor; Retinol binding protein receptor

  9. XM_009005233.4 → XP_009003481.1  receptor for retinol uptake STRA6 isoform X1

    See identical proteins and their annotated locations for XP_009003481.1

    UniProtKB/TrEMBL
    F6PWC9
    Conserved Domains (1) summary
    pfam14752
    Location:41 → 699
    RBP_receptor; Retinol binding protein receptor

  10. XM_035259210.2 → XP_035115101.1  receptor for retinol uptake STRA6 isoform X2

    UniProtKB/TrEMBL
    A0A8I3WIP0, F6PWC9
    Conserved Domains (1) summary
    pfam14752
    Location:41 → 656
    RBP_receptor; Retinol binding protein receptor

  11. XM_035259212.2 → XP_035115103.1  receptor for retinol uptake STRA6 isoform X3

    UniProtKB/TrEMBL
    F6PWC9
    Conserved Domains (1) summary
    pfam14752
    Location:2 → 631
    RBP_receptor; Retinol binding protein receptor
Nucleotide Protein
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