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GPATCH3 G-patch domain containing 3 [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100387022, updated on 8-Mar-2024

Summary

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Gene symbol
GPATCH3
Gene description
G-patch domain containing 3
See related
Ensembl:ENSCJAG00000010000
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 7
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 7 NC_071448.1 (60641710..60650218, complement)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 7 NC_048389.1 (62141694..62150232, complement)

Chromosome 7 - NC_071448.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC118155372 Neighboring gene GPN-loop GTPase 2 Neighboring gene nuclear receptor subfamily 0 group B member 2 Neighboring gene nuclear distribution C, dynein complex regulator

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of RIG-I signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of type I interferon production IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
G patch domain-containing protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071448.1 Reference mCalJa1.2.pat.X

    Range
    60641710..60650218 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009000716.4 → XP_008998964.1  G patch domain-containing protein 3

    UniProtKB/TrEMBL
    F7H6A5
    Related
    ENSCJAP00000018409.2
    Conserved Domains (1) summary
    smart00443
    Location:409 → 456
    G_patch; glycine rich nucleic binding domain
Nucleotide Protein
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