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GXYLT2 glucoside xylosyltransferase 2 [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100386599, updated on 8-Mar-2024

Summary

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Gene symbol
GXYLT2
Gene description
glucoside xylosyltransferase 2
See related
Ensembl:ENSCJAG00000015146
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 15
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 15 NC_071456.1 (48502602..48603361)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 15 NC_048397.1 (49151403..49250198)

Chromosome 15 - NC_071456.1Genomic Context describing neighboring genes Neighboring gene SHQ1, H/ACA ribonucleoprotein assembly factor Neighboring gene U2 spliceosomal RNA Neighboring gene 26S proteasome non-ATPase regulatory subunit 12-like Neighboring gene enoyl-[acyl-carrier-protein] reductase, mitochondrial-like Neighboring gene protein phosphatase 4 regulatory subunit 2 Neighboring gene U7 small nuclear RNA Neighboring gene endogenous Bornavirus like nucleoprotein 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables UDP-xylosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in O-glycan processing IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glucoside xylosyltransferase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071456.1 Reference mCalJa1.2.pat.X

    Range
    48502602..48603361
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002758582.5 → XP_002758628.1  glucoside xylosyltransferase 2 isoform X1

    UniProtKB/TrEMBL
    F7DSQ8
    Related
    ENSCJAP00000027920.2
    Conserved Domains (2) summary
    cd06430
    Location:110 → 413
    GT8_like_2; GT8_like_2 represents a subfamily of GT8 with unknown function
    COG1442
    Location:126 → 395
    RfaJ; Lipopolysaccharide biosynthesis protein, LPS:glycosyltransferase [Cell wall/membrane/envelope biogenesis]

  2. XM_054245870.1 → XP_054101845.1  glucoside xylosyltransferase 2 isoform X2

  3. XM_054245871.1 → XP_054101846.1  glucoside xylosyltransferase 2 isoform X3

    UniProtKB/TrEMBL
    A0A5F4W7K9

RNA

  1. XR_008476770.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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