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CAPS2 calcyphosine 2 [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100386560, updated on 8-Mar-2024

Summary

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Gene symbol
CAPS2
Gene description
calcyphosine 2
See related
Ensembl:ENSCJAG00000001238
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 9
Exon count:
19
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 9 NC_071450.1 (74345013..74393659, complement)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 9 NC_048391.1 (75470735..75520247, complement)

Chromosome 9 - NC_071450.1Genomic Context describing neighboring genes Neighboring gene potassium voltage-gated channel subfamily C member 2 Neighboring gene U1 spliceosomal RNA Neighboring gene GLIPR1 like 1 Neighboring gene putative ribosome-binding factor A, mitochondrial Neighboring gene GLIPR1 like 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calcyphosin-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071450.1 Reference mCalJa1.2.pat.X

    Range
    74345013..74393659 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035257055.2 → XP_035112946.2  calcyphosin-2 isoform X3

  2. XM_009004249.4 → XP_009002497.3  calcyphosin-2 isoform X2

  3. XM_009004251.4 → XP_009002499.1  calcyphosin-2 isoform X4

    Conserved Domains (2) summary
    pfam13499
    Location:419 → 466
    EF-hand_7; EF-hand domain pair
    cl08302
    Location:423 → 466
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...

  4. XM_009004246.4 → XP_009002494.3  calcyphosin-2 isoform X1

    UniProtKB/TrEMBL
    F6QHT1

  5. XM_035257058.2 → XP_035112949.2  calcyphosin-2 isoform X3

  6. XM_017976215.3 → XP_017831704.3  calcyphosin-2 isoform X1

    UniProtKB/TrEMBL
    F6QHT1

  7. XM_035257059.2 → XP_035112950.2  calcyphosin-2 isoform X3

  8. XM_035257053.2 → XP_035112944.2  calcyphosin-2 isoform X1

    UniProtKB/TrEMBL
    F6QHT1

  9. XM_035257056.2 → XP_035112947.2  calcyphosin-2 isoform X3

  10. XM_009004247.4 → XP_009002495.3  calcyphosin-2 isoform X1

    UniProtKB/TrEMBL
    F6QHT1
Nucleotide Protein
Heading Accession and Version

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