U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

TRIM56 tripartite motif containing 56 [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100386123, updated on 8-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
TRIM56
Gene description
tripartite motif containing 56
See related
Ensembl:ENSCJAG00000015951
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See TRIM56 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 2 NC_071443.1 (10714421..10725020, complement)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 2 NC_048384.1 (11039929..11045702, complement)

Chromosome 2 - NC_071443.1Genomic Context describing neighboring genes Neighboring gene adaptor related protein complex 1 subunit sigma 1 Neighboring gene serpin family E member 1 Neighboring gene mucin-17 Neighboring gene mucin 17, cell surface associated

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ubiquitin-protein transferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in innate immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of chromatin IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
E3 ubiquitin-protein ligase TRIM56

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071443.1 Reference mCalJa1.2.pat.X

    Range
    10714421..10725020 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008982178.4 → XP_008980426.1  E3 ubiquitin-protein ligase TRIM56

    See identical proteins and their annotated locations for XP_008980426.1

    UniProtKB/TrEMBL
    F7I5G2
    Related
    ENSCJAP00000029370.2
    Conserved Domains (6) summary
    cd00021
    Location:169 → 205
    BBOX; B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction.
    cd05819
    Location:552 → 590
    NHL; NHL repeat [structural motif]
    sd00039
    Location:560 → 589
    7WD40; WD40 repeat [structural motif]
    cl18310
    Location:521 → 748
    NHL; NHL repeat unit of beta-propeller proteins
    cd16584
    Location:19 → 60
    RING-HC_TRIM56_C-V; RING finger, HC subclass, found in tripartite motif-containing protein 56 (TRIM56) and similar proteins
    cl28410
    Location:8 → 214
    RAD18; RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]

  2. XM_002743972.6 → XP_002744018.1  E3 ubiquitin-protein ligase TRIM56

    See identical proteins and their annotated locations for XP_002744018.1

    UniProtKB/TrEMBL
    F7I5G2
    Conserved Domains (6) summary
    cd00021
    Location:169 → 205
    BBOX; B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction.
    cd05819
    Location:552 → 590
    NHL; NHL repeat [structural motif]
    sd00039
    Location:560 → 589
    7WD40; WD40 repeat [structural motif]
    cl18310
    Location:521 → 748
    NHL; NHL repeat unit of beta-propeller proteins
    cd16584
    Location:19 → 60
    RING-HC_TRIM56_C-V; RING finger, HC subclass, found in tripartite motif-containing protein 56 (TRIM56) and similar proteins
    cl28410
    Location:8 → 214
    RAD18; RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.