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COL7A1 collagen type VII alpha 1 chain [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100385760, updated on 8-Mar-2024

Summary

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Gene symbol
COL7A1
Gene description
collagen type VII alpha 1 chain
See related
Ensembl:ENSCJAG00000002978
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 15
Exon count:
119
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 15 NC_071456.1 (24966590..24998520, complement)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 15 NC_048397.1 (25665986..25697916, complement)

Chromosome 15 - NC_071456.1Genomic Context describing neighboring genes Neighboring gene 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4 Neighboring gene urocortin 2 Neighboring gene cytochrome b-c1 complex subunit 1, mitochondrial Neighboring gene 40S ribosomal protein S17-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables serine-type endopeptidase inhibitor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
collagen alpha-1(VII) chain

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071456.1 Reference mCalJa1.2.pat.X

    Range
    24966590..24998520 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035275397.2 → XP_035131288.1  collagen alpha-1(VII) chain

    UniProtKB/TrEMBL
    A0A8I3VXE1, A0A8I3ZZE7
    Conserved Domains (7) summary
    PHA03169
    Location:1398 → 1586
    PHA03169; hypothetical protein; Provisional
    cd00063
    Location:687 → 771
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00109
    Location:2872 → 2928
    KU; BPTI/Kunitz family of serine protease inhibitors; Structure is a disulfide rich alpha+beta fold. BPTI (bovine pancreatic trypsin inhibitor) is an extensively studied model structure.
    cd01482
    Location:37 → 191
    vWA_collagen_alphaI-XII-like; Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different ...
    pfam00041
    Location:233 → 317
    fn3; Fibronectin type III domain
    pfam00092
    Location:1052 → 1220
    VWA; von Willebrand factor type A domain
    pfam01391
    Location:1449 → 1504
    Collagen; Collagen triple helix repeat (20 copies)
Nucleotide Protein
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